View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_low_2 (Length: 753)
Name: NF12967_low_2
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 232 - 736
Target Start/End: Complemental strand, 18110415 - 18109911
Alignment:
| Q |
232 |
agcactcattcctactatcttttcctctaaattttctttggtaaccaatttctctattgtttttggttctacttcctcttcactcttttgagccttttca |
331 |
Q |
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| T |
18110415 |
agcactcattcctactatcttttcctctaaattttctttggtaaccaatttctctattgtttttggttctacttcctcttcacccttttgagccttttca |
18110316 |
T |
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| Q |
332 |
tttgtttgtgttttggttctctctatagatgttggttttgactccaacacttgttgaccattttgaggcttttcatctatttgtgttttggctctctcta |
431 |
Q |
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| T |
18110315 |
tttgtttgtgctttggttctctctatagatgttggttttgactccaacacttgttgaccattttgaggcttttcatctatttgtgttttggctctctcta |
18110216 |
T |
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| Q |
432 |
ttgatgttggtcttgtttcaaattcttcttgacccttttgagacttttcatctatttggtcattggttgtgtctttagatgttggttttggctcaaattc |
531 |
Q |
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| T |
18110215 |
ttgatgttggtcttgtttcaaattcttcttgacccttttgagacttttcatctatttggtcattggttgtgtctttagatgttggttttggctcaaattc |
18110116 |
T |
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| Q |
532 |
ttgttgacccttttgaggaatttgagatgatgtgtcatcatcattttgtgtcnnnnnnncaatgctttgagaagtttgaggtgaatcacttttcatgtct |
631 |
Q |
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| T |
18110115 |
ttgttgacccttttgaggaatttgagatgatgtgtcatcatcattttgtgtctttttttcaatgctttgagaagtttgaggtgaatcacttttcatgtct |
18110016 |
T |
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| Q |
632 |
ttggttgattcttccaaattagtagattgtggtgatggaatattggtctcttgagctttttcaacctttgcttcatctaaatctttattatttgaaggac |
731 |
Q |
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| T |
18110015 |
ttagttgattcttccaaattagtagattgtggtggtggaatattggtctcttgagctttttcaacctttgcttcatctaaatctttattatttgaaggac |
18109916 |
T |
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| Q |
732 |
ttttt |
736 |
Q |
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| T |
18109915 |
ttttt |
18109911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 18110639 - 18110477
Alignment:
| Q |
8 |
tgagatgaagtagcagcaaattttctgattccattctttccttcttgatttggaggaattctgcagcaagattccttttccttctctggaacatttggag |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110639 |
tgagaagaagtagcagcaaattttctgattccattctttccttcttgattgggaggaattctgcagcaagattccttttccttctctggaacatttggag |
18110540 |
T |
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| Q |
108 |
cagaaggttctgctttttcaacttccttttcttctaagttttgattcttgcttgactcataag |
170 |
Q |
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| T |
18110539 |
cagaaggttctgctttttcaacttccttttcttctaagttttgattcttgcttgactcataag |
18110477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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