View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_low_3 (Length: 686)
Name: NF12967_low_3
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 230 - 572
Target Start/End: Complemental strand, 11050731 - 11050385
Alignment:
| Q |
230 |
tgtttgaactccgactatttcatttgtgtatgtaagtttttaataactttgtcgtttcttttatctaccaaacnnnnnnntcatcaa-----agtccata |
324 |
Q |
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| T |
11050731 |
tgtttgaattccgactatttcatttgtgtatgtgagtttttaacaactttgt-gtttcttttatctaccaaataaaaatatcatcaataaaaagtccata |
11050633 |
T |
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| Q |
325 |
taacattgtgaattttgtgattcacttttgctcccatgcatgtgtcgtgcttctttgtctgttgtatcaattgacttgactctgcattannnnnnnngaa |
424 |
Q |
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| T |
11050632 |
taacattgtgaattttgtgattcacttttgctcccatgcatgtgtcgtgcttctttgtctgttgtatcaattgacttgactctgcattaatctttttgaa |
11050533 |
T |
|
| Q |
425 |
tgcgaagatgattaaaattaaaattctcattcagtgctacctcttaccactataatttaaatgcatatgtttcttctctattccaacataatttttccac |
524 |
Q |
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| T |
11050532 |
tgcgaagataattaaaattaaaattctcattcagtgctccctcttaccactataatttaaatgcatatgtttcttctctattccaacataatttttccac |
11050433 |
T |
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| Q |
525 |
acaaacaaaactatacagcataaacctttctcctaaaccgaatgaagc |
572 |
Q |
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| T |
11050432 |
acaaacaaaaatatacagcataaacctttctcctaaaccgaatgaagc |
11050385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 11050971 - 11050814
Alignment:
| Q |
11 |
catcatcatgaatttaaaggcaa-cgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacagtctattgatgtttcaataaaa |
109 |
Q |
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| T |
11050971 |
catcatcatgaattaaaagacaaaccatacaatggtaactggtaataagttttgtaacaagaacaattggcacaaagagtctattgatgtttcaataaaa |
11050872 |
T |
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| Q |
110 |
agaataaaagtggccggctannnnnnnnctatatggacaataagtggccggctaacttt |
168 |
Q |
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| T |
11050871 |
agaataaaagtggccggctatttttttt-tatatggacaataagtggccggctaacttt |
11050814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 10218998 - 10218891
Alignment:
| Q |
22 |
atttaaaggcaacgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacagtctattgatgtttcaataaaaagaataaaagtg |
121 |
Q |
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| T |
10218998 |
atttaaaggcaacgatacaatgataactgataataagttttgtaacaagaacaattggcacaaacgatctattgatatttcaataaaaagaataaaagtg |
10218899 |
T |
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| Q |
122 |
gccggcta |
129 |
Q |
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|||||||| |
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| T |
10218898 |
gccggcta |
10218891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 459 - 572
Target Start/End: Complemental strand, 10218690 - 10218579
Alignment:
| Q |
459 |
tgctacctcttaccactataatttaaatgcatatgtttcttctctattccaacataatttttccacacaaacaaaactatacagcataaacctttctcct |
558 |
Q |
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||||| |||||||||||| ||||| || ||||||| ||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
10218690 |
tgctagctcttaccactagaatttgaacgcatatgcttcttctctgttcca-cataatttttccacacaaacaaaa-tatatagcataaacctttctcct |
10218593 |
T |
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| Q |
559 |
aaaccgaatgaagc |
572 |
Q |
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| T |
10218592 |
aaaccgaatgaagc |
10218579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 10218831 - 10218761
Alignment:
| Q |
235 |
gaactccgactatttcatttgtgtatgtaagtttttaataacttt---gtcgtttcttttatctaccaaac |
302 |
Q |
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| T |
10218831 |
gaacttcgactatttcatttgtgtatgtgagtttttaatagcgttgtcgtcgtttcttttatttaccaaac |
10218761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 668
Target Start/End: Complemental strand, 11050329 - 11050289
Alignment:
| Q |
628 |
cccaaacagaattgtggcacaagcattaggaaaccaaacag |
668 |
Q |
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| T |
11050329 |
cccaaacagagttgttgcacaagcattaggaaaccaaacag |
11050289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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