View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12967_low_5 (Length: 625)
Name: NF12967_low_5
Description: NF12967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12967_low_5 |
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| [»] chr8 (4 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 451 - 625
Target Start/End: Complemental strand, 42383926 - 42383752
Alignment:
| Q |
451 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcctgctttgctttttccctattctat |
550 |
Q |
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| T |
42383926 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
42383827 |
T |
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| Q |
551 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat |
625 |
Q |
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| T |
42383826 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat |
42383752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 42387273 - 42387197
Alignment:
| Q |
218 |
gttttcctgtgacatggagaatgtggtggatgtattatgtcgagagatctataattctctgaggctattggtcgatg |
294 |
Q |
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| T |
42387273 |
gttttcctgtgacatggagaatgtggtggatgtattatgtcgagagatctataattctctgaggctattggtcgatg |
42387197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 42387062 - 42387000
Alignment:
| Q |
350 |
tcgattggagcaggtatcaattttctgatctgaatccacataagattgcttcgtttgtttgtt |
412 |
Q |
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| T |
42387062 |
tcgattggagcaggtatcaattttctgatctgaatccacataagattgcttcgtttgtttgtt |
42387000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 42387160 - 42387117
Alignment:
| Q |
291 |
gatgcatcgcagagaatgtcggtcgaagctaggctaccccattacatt |
338 |
Q |
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| T |
42387160 |
gatgcatcgcagagaatgtcg----aagctaggctaccccattacatt |
42387117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 451 - 625
Target Start/End: Complemental strand, 1749019 - 1748845
Alignment:
| Q |
451 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcctgctttgctttttccctattctat |
550 |
Q |
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| T |
1749019 |
tgagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctat |
1748920 |
T |
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| Q |
551 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat |
625 |
Q |
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| T |
1748919 |
attatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctat |
1748845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 452 - 622
Target Start/End: Original strand, 20686192 - 20686362
Alignment:
| Q |
452 |
gagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcctgctttgctttttccctattctata |
551 |
Q |
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| T |
20686192 |
gagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgatgttgtgtcgttcctgctttgctttttcaatattctata |
20686291 |
T |
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| Q |
552 |
ttatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgc |
622 |
Q |
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| T |
20686292 |
tcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgttgttactgc |
20686362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 1752981 - 1752808
Alignment:
| Q |
17 |
agttgagatttagattcgttacgttaggtggtttct-ttatcttggttttgttgttccgttttggaacacgagatctgaaatgggctgaacattatttgg |
115 |
Q |
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| T |
1752981 |
agttgagatttagattcgttatgttaggtgctttctcttgattttgtgttgttgttccgttttggaacacgagatctgaaatgggctgaacattatttgg |
1752882 |
T |
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| Q |
116 |
gcttattgggtttgggctcttatatgggagaactgaatcaat-----atcaataaattttacaaaagagaatagtc |
186 |
Q |
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| T |
1752881 |
gcttattgggtttgggctcttatatggga--actcaatcaatcaataatcaataaatcttacaaaagagaatagtc |
1752808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 622
Target Start/End: Original strand, 20686385 - 20686446
Alignment:
| Q |
561 |
tttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgc |
622 |
Q |
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| T |
20686385 |
tttccaaatttgccaggaaacctgcgtcaaatcgtaaaggagccataagttgttgttactgc |
20686446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 541 - 601
Target Start/End: Complemental strand, 84932 - 84872
Alignment:
| Q |
541 |
cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga |
601 |
Q |
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| T |
84932 |
cctattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaagga |
84872 |
T |
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