View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12968_high_16 (Length: 367)
Name: NF12968_high_16
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_high_16 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 29946127 - 29945776
Alignment:
| Q |
16 |
atagtagagaaattttctatagacataatcagatcttggcaaaaacaaaggaagtactattgcactaaaacatgaagagttccaaactcagaaacactta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29946127 |
atagtagagaaattttctatagacataaccagatcttggcaaaaccaaaggaagtactattgcactaaaacatgaagagttccaaactcagaaacactta |
29946028 |
T |
|
| Q |
116 |
aaaaacttagttaaaagagctagccccattaaaaaggccgggatcaatgctcatcatctctgtctgtatcatccttaaaactctattcctaccaactttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29946027 |
aaaaacttagttaaaagagctagccccattaaaaaggccgggatcaatgctcatcatctctgtctgtatcatccttaaaactctattcctaccaactttc |
29945928 |
T |
|
| Q |
216 |
agtttttgactgtacaaacaacttctcttaagaaagccctcaaacaccatatttaaccaattaaccttgaaatttctaacacatcaagtaaacactagta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29945927 |
agtttttgactgtacaaacaacttctcttaagaaagccctcaaacaccatatttaaccaattaaccttgaaatttctaacacatcaagtaaacactagta |
29945828 |
T |
|
| Q |
316 |
gtagtagttatattatttagtaatgaaatccatttccattgatattgccatt |
367 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29945827 |
gtagtagttatatcatttagtaatgaaatccatttccattgatattgccatt |
29945776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 85 - 367
Target Start/End: Complemental strand, 25690040 - 25689763
Alignment:
| Q |
85 |
acatgaagagttccaaactcagaaacacttaaaaaact----tagttaaaagagctagccccattaaaaaggccgggatcaatgctcatcatctctgtct |
180 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
25690040 |
acatgaagagttccaaactcagaaacatttaaaaaaaaaaactagttaaaagagctatccccattaaaaaggccgcgatcaatactcatc---tctgtct |
25689944 |
T |
|
| Q |
181 |
gtatcatccttaaaactctattcctaccaactttcagtttttgactgtacaaacaacttctcttaagaaagccctcaaacaccatatttaaccaattaac |
280 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||| |
|
|
| T |
25689943 |
gtatcatccttaa--ctctattcctaccaactttaatttttt-actgtacaaacaacttctcttaacaaagacctgaaacaccatatttaatcaattaac |
25689847 |
T |
|
| Q |
281 |
cttgaaatttctaacacatcaagtaaacactagtagtagtagttatattatttagtaatgaaatccatttccattgatattgccatt |
367 |
Q |
| |
|
|| |||||||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25689846 |
ctaaaaatttctaaagcatcaagtaaacac---cagtagtagttataacatttactaatgaaatccatttccattgatattgccatt |
25689763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 5588731 - 5588924
Alignment:
| Q |
16 |
atagtagagaaattttctatagacataatcagatcttggcaaaaacaaaggaagtactattgcactaaaac-----------------atgaagagttcc |
98 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||| | |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
5588731 |
atagtagagaaattatctatagacagaaccagatctttgaaaaaacaaagacagtactattgcactaaaacgtcaggagttccattacatgaagagttcc |
5588830 |
T |
|
| Q |
99 |
aaactcagaaacacttaaaaaacttagttaaaagagctagccccattaaaaaggccgggatcaatgctcatcatctctgtctgtatcatccttaaaa |
195 |
Q |
| |
|
|| |||| ||||||| ||||||||||||||| ||| |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5588831 |
aacctcaaaaacactaaaaaaacttagttaagagaattagccccattaaaagggtcgggatcaatgc---tcatctctgtctgtatcatccttaaaa |
5588924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University