View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_high_19 (Length: 356)
Name: NF12968_high_19
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 22218954 - 22218800
Alignment:
| Q |
189 |
gagtttgtggttggatgttactaaataggttgaggaatctgataagggcgtgaagagcactagctatggtgcaaaatgcttctgcacttgagccatcccc |
288 |
Q |
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| T |
22218954 |
gagtttgtgattggatgttactaaataggttgaggaatctgataagggcgtgaagagcactagctatcgtgtgaaatgcttctgcacttgagtcggcccc |
22218855 |
T |
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| Q |
289 |
tgctgca--tccccttgagaggtaacatacctcacatgaatttgaatggatcccc |
341 |
Q |
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| T |
22218854 |
tgctgcatctccccttgagaggtaacatacctcacatgcatttgaatggaacccc |
22218800 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 14689782 - 14689685
Alignment:
| Q |
147 |
aatttatcattctcaaggttcactcatatatcctaataagaggagtttgtggttggatgttactaaataggttgaggaatctgataagggcgtgaaga |
244 |
Q |
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| T |
14689782 |
aatttatcattgtcgaggttcatttacatatcctaataagaagagtttgtgattggtggttactaagtcggtcgaagaatctgaaaagggcatgaaga |
14689685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 14660407 - 14660446
Alignment:
| Q |
103 |
tggttatatcgcgtcttgtgtgtttagtgaattaatatat |
142 |
Q |
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| T |
14660407 |
tggttatatcgtgtcttgtgtgtttagtgaattaatatat |
14660446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 14678672 - 14678633
Alignment:
| Q |
103 |
tggttatatcgcgtcttgtgtgtttagtgaattaatatat |
142 |
Q |
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| T |
14678672 |
tggttatatcgtgtcttgtgtgtttagtgaattaatatat |
14678633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 7490703 - 7490648
Alignment:
| Q |
16 |
atctgagttattagattgaataattttg-atgttttattagcaccgacaatatatt |
70 |
Q |
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| T |
7490703 |
atctgaattgttagattgaataattttgaatgatttattagcaccgacagtatatt |
7490648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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