View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_high_25 (Length: 291)
Name: NF12968_high_25
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 45424598 - 45424705
Alignment:
| Q |
13 |
aatattacaatgtatgttactctcaaataattatattcttctatttactcatgacagtaaaaatactctaaggattaataaagataattaagcaaaatta |
112 |
Q |
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| T |
45424598 |
aatattacaatgtatgttactctcaaataattatattcttctatttaatcatgacagtaaaaatactctaag----aataaagataattaagcaaaatta |
45424693 |
T |
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| Q |
113 |
taacactcatca |
124 |
Q |
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|||||||||||| |
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| T |
45424694 |
taacactcatca |
45424705 |
T |
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Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 45424773 - 45424853
Alignment:
| Q |
192 |
actttcgacttcctagcaccagatgccctttaccttctacacataattcaaaggatcgtgtataacaatgtcatgtttgcc |
272 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45424773 |
actttcgacttcctagcaccagatgcccttgaccttctacacataattcaaaggatcgtgtataacaatgtcatgtttgcc |
45424853 |
T |
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