View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_high_27 (Length: 272)
Name: NF12968_high_27
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 32302162 - 32301905
Alignment:
| Q |
1 |
tgaacagctaccatcttgcaacataaccatacgagtgaaaccactacgaaacaacttccagctggcatcgttaaggaaacaacaaacacaagatatgaga |
100 |
Q |
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| T |
32302162 |
tgaacagctaccatcttgcaacataaccatatgagtgaaaccactacggcacaacttccagctagcatcgttaaggaaacaacaaacacaagatatgaga |
32302063 |
T |
|
| Q |
101 |
aacccaagtaaaagaagatgcagaaagatccgaaattaaagtccagatttaccaaacaaccgagaaaaagtagtttaataataatatgaacgattatagg |
200 |
Q |
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| T |
32302062 |
aacccaagtaaaagaagatgcagaaagatccgaaataaaagtccagatttaccaaacaaccgagaaaaagtagtctaataataatatgaacgattatagg |
32301963 |
T |
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| Q |
201 |
tgattttgggaaattaatacaaattttaaaaaatcattattttatctactagtataat |
258 |
Q |
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| T |
32301962 |
tgattttgggaaattaatacaaattttaaaaaatcattattttatctactaatataat |
32301905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 32807793 - 32807849
Alignment:
| Q |
201 |
tgattttgggaaattaatacaaattttaaaaaatcattattttatctactagtataa |
257 |
Q |
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||||||||| ||||||||||| |||||||||| |||||||||| ||||| ||||| |
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| T |
32807793 |
tgattttggaaaattaatacacattttaaaaatgtattattttatttactaatataa |
32807849 |
T |
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