View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_high_6 (Length: 612)

Name: NF12968_high_6
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_high_6
NF12968_high_6
[»] chr2 (14 HSPs)
chr2 (31-428)||(42121827-42122219)
chr2 (438-597)||(42122260-42122418)
chr2 (32-275)||(22495909-22496153)
chr2 (141-275)||(18394912-18395047)
chr2 (32-180)||(11713056-11713200)
chr2 (32-130)||(12967364-12967462)
chr2 (31-109)||(18394806-18394884)
chr2 (143-275)||(2154263-2154397)
chr2 (141-213)||(12967335-12967407)
chr2 (219-275)||(30760155-30760211)
chr2 (220-275)||(11573634-11573689)
chr2 (220-275)||(25678273-25678328)
chr2 (141-208)||(37891691-37891758)
chr2 (220-275)||(37893030-37893085)
[»] chr4 (26 HSPs)
chr4 (31-275)||(28796621-28796864)
chr4 (32-275)||(47043824-47044066)
chr4 (32-259)||(53265809-53266034)
chr4 (32-130)||(42099393-42099491)
chr4 (32-130)||(12572512-12572609)
chr4 (31-130)||(887034-887133)
chr4 (32-109)||(33161794-33161871)
chr4 (31-108)||(46814019-46814096)
chr4 (141-260)||(33161646-33161766)
chr4 (32-109)||(36174415-36174492)
chr4 (220-275)||(28798167-28798222)
chr4 (143-213)||(46813917-46813988)
chr4 (231-275)||(37577273-37577317)
chr4 (220-275)||(12572429-12572484)
chr4 (220-275)||(12572841-12572896)
chr4 (222-275)||(24972391-24972444)
chr4 (69-130)||(33161723-33161784)
chr4 (231-275)||(628089-628133)
chr4 (69-109)||(36174502-36174542)
chr4 (220-275)||(33164527-33164582)
chr4 (220-275)||(40450932-40450987)
chr4 (220-275)||(46817454-46817509)
chr4 (219-270)||(55312075-55312126)
chr4 (221-275)||(36172166-36172220)
chr4 (231-275)||(36498907-36498951)
chr4 (221-269)||(42099549-42099597)
[»] chr5 (15 HSPs)
chr5 (33-275)||(1974157-1974397)
chr5 (32-275)||(40017188-40017432)
chr5 (32-208)||(3461419-3461593)
chr5 (31-130)||(1975116-1975215)
chr5 (33-126)||(19401836-19401929)
chr5 (32-109)||(6270774-6270851)
chr5 (220-275)||(4845302-4845357)
chr5 (63-130)||(6270722-6270789)
chr5 (229-275)||(28677887-28677933)
chr5 (219-275)||(6269237-6269293)
chr5 (220-275)||(1145142-1145197)
chr5 (33-91)||(4846850-4846908)
chr5 (220-275)||(1975324-1975379)
chr5 (220-275)||(5504737-5504792)
chr5 (220-275)||(33144206-33144261)
[»] chr6 (8 HSPs)
chr6 (32-259)||(14830409-14830634)
chr6 (32-275)||(14153355-14153596)
chr6 (32-99)||(14154376-14154443)
chr6 (31-268)||(16444276-16444510)
chr6 (70-130)||(14154482-14154542)
chr6 (221-275)||(807192-807246)
chr6 (32-109)||(35053468-35053549)
chr6 (219-275)||(14154598-14154654)
[»] chr1 (10 HSPs)
chr1 (32-275)||(39650197-39650440)
chr1 (34-176)||(47485489-47485629)
chr1 (32-128)||(50065609-50065705)
chr1 (220-275)||(50069256-50069311)
chr1 (220-275)||(3792561-3792616)
chr1 (220-275)||(11821161-11821216)
chr1 (223-275)||(49033755-49033807)
chr1 (221-275)||(5119054-5119108)
chr1 (190-275)||(50065479-50065565)
chr1 (219-275)||(3792475-3792531)
[»] chr3 (23 HSPs)
chr3 (32-275)||(53824292-53824534)
chr3 (32-275)||(35485244-35485487)
chr3 (32-180)||(16967815-16967962)
chr3 (32-116)||(44833583-44833667)
chr3 (32-126)||(2325447-2325541)
chr3 (33-109)||(42993680-42993755)
chr3 (34-109)||(42387765-42387840)
chr3 (32-103)||(42947536-42947607)
chr3 (199-275)||(16931447-16931524)
chr3 (141-277)||(42993565-42993702)
chr3 (220-275)||(53827683-53827738)
chr3 (141-208)||(42387868-42387936)
chr3 (220-275)||(42994917-42994972)
chr3 (220-280)||(19866729-19866789)
chr3 (141-275)||(42947376-42947512)
chr3 (220-275)||(6162704-6162759)
chr3 (220-275)||(15042028-15042083)
chr3 (220-275)||(34086862-34086916)
chr3 (225-275)||(44836505-44836555)
chr3 (69-130)||(42387850-42387911)
chr3 (85-126)||(48086783-48086824)
chr3 (231-275)||(13843626-13843670)
chr3 (231-275)||(44430419-44430463)
[»] chr7 (14 HSPs)
chr7 (32-275)||(1537082-1537323)
chr7 (35-128)||(31826066-31826157)
chr7 (32-258)||(48211798-48212022)
chr7 (32-130)||(38790995-38791088)
chr7 (57-130)||(46302352-46302425)
chr7 (32-109)||(26502266-26502343)
chr7 (32-109)||(26590371-26590448)
chr7 (141-275)||(30362819-30362954)
chr7 (190-275)||(42548162-42548247)
chr7 (220-275)||(31823590-31823645)
chr7 (240-275)||(40917721-40917756)
chr7 (221-275)||(31853294-31853348)
chr7 (220-280)||(20379690-20379750)
chr7 (231-275)||(44552027-44552071)
[»] chr8 (7 HSPs)
chr8 (32-130)||(28703986-28704084)
chr8 (141-208)||(4640737-4640804)
chr8 (220-275)||(33800520-33800575)
chr8 (220-275)||(28703882-28703937)
chr8 (221-275)||(33220025-33220078)
chr8 (231-275)||(9418588-9418632)
chr8 (141-213)||(43635194-43635266)
[»] scaffold1455 (2 HSPs)
scaffold1455 (32-130)||(210-308)
scaffold1455 (141-208)||(265-332)
[»] scaffold0041 (2 HSPs)
scaffold0041 (240-275)||(55339-55374)
scaffold0041 (231-275)||(24398-24442)
[»] scaffold0016 (1 HSPs)
scaffold0016 (144-205)||(69844-69905)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 31 - 428
Target Start/End: Original strand, 42121827 - 42122219
Alignment:
Q  31 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42121827 tgtttgttcttcagttctgcatcggccaactggcgcgagttaactcacgctcagaatacactagcgcaagttcagtcacactacgtgacttaacttaggt 42121926  T
Q  131 nnnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcacagaacattttggaca 230  Q
              |||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||| |||||||||| |||| ||  |||||||  |||    
T  42121927 aaaaaaaa--tacactagcgcatgttaagtcacgtagtgtgacttaacataggtaaaaaatacactaacgcatgttaacatgcgcatgacattttaaaca 42122024  T
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaattattatgnnnnnnncgccaaaaaagagacatattatctcgtatgtacaattcagat 330  Q
    |||| ||||  |||||| ||||||||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||    
T  42122025 tttattttaaaaatgagtgatactatttggataatgagcagaattcttatgtttttttggccaaaaaagagacatattatctcgtatgtacaattcagat 42122124  T
Q  331 agtaaatggttgcaaattgatatattggacgtgaattcacatgctgctcaattcatcattttttaacatttaatatttgtgacttagccgctagcata 428  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42122125 agtaaatggttgcaaattgatatattggacgtgaattcaca---tgctcaattcatcattttttaacatttaatatttgtgacttagcccctagcata 42122219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 438 - 597
Target Start/End: Original strand, 42122260 - 42122418
Alignment:
Q  438 ctcatgtgagttattataatagtggaacaattttttattacggtggaacaacaaagtttagcctatcacgttgtagcatcataattgagttatccacaca 537  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42122260 ctcatgtgagttattataatagtggaacaatttt-tattacggtggaacaacaaagtttagcctatcacgttgtagcatcataattgagttatccacaca 42122358  T
Q  538 ctaattttaaattaatccacctaaaatctatagtagacaaagcattacactagaatattg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42122359 ctaattttaaattaatccacctaaaatctatagtagacaaagcattacactagaatattg 42122418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 22495909 - 22496153
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  22495909 gtttgttcttcagttctacaccggccaactggcgcgagttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggt- 22496007  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacat---tgataaaatatacactagcgcatgttaatatgc-acagaacattttgg 227  Q
             |||||||||||||||||| |||||||| ||||||||||||   | | |||| |||||||| |||||||||| ||||   ||  |||||| |    
T  22496008 --aaaaaaatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaaaatacactatcgcatgttaacatgcgtaagggcattttag 22496105  T
Q  228 acatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||   ||||||||||||||||| | ||||||||| ||||    
T  22496106 acatttactttgaaaatgagcgatactatttaggtaatgagcataatt 22496153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 18394912 - 18395047
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcacaga-acattttggacatttacttta 239  Q
    ||||||||||| |||||| ||||||||  ||||||||||| | ||||| ||||||||||||||||||| |||||||||  ||||||||||| |||||||     
T  18394912 tacactagcgcgtgttaagtcacgtagcttgacttaacataggtaaaaaatacactagcgcatgttaacatgcacagaggcattttggacaattactttg 18395011  T
Q  240 ggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||| | ||||| ||||||||||||||    
T  18395012 ggaatgagcgatattgtttgggtaatgagcagaatt 18395047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 11713200 - 11713056
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    ||||||| || |||||||||||||  |||| ||| ||||||||||||  |||||||||||| | |||||||||||||| ||||||||||||||||||||     
T  11713200 gtttgttttttagttctgcaccggctaactagcgtgagttaactcacgctcagaatacacttgtgcaagttaagtcacgctacgtgacttaacttaggt- 11713102  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacat 180  Q
             |||||||||||||||||| ||||||||  |||||||||||    
T  11713101 ---acaaaatacactagcgcatgttaagtcacgtagcatgacttaacat 11713056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 12967462 - 12967364
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||||||||||| |||| |||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    ||||||||||| |||||    
T  12967462 gtttgttcttcaattctacaccggccaactagcgtgagttaactcacgttcagaatacactagcgcaagttaagtcacgtagcgtgacttaacataggt 12967364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 18394806 - 18394884
Alignment:
Q  31 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    ||||||||||| ||||||||||||| ||||| ||| | ||||||||||  |||||||| ||||||||||||||||||||    
T  18394806 tgtttgttctttagttctgcaccggccaactagcgtgggttaactcaccctcagaatagactagcgcaagttaagtcac 18394884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 2154397 - 2154263
Alignment:
Q  143 cactagcgcatgttaaatcacgtagtgtgacttaacattgataaaata-tacactagcgcatgttaatatgcacaga-acattttggacatttactttag 240  Q
    |||||| ||||||||| |||||||| |||||||||||| | ||||| | |||||||  |||||||||  |||  ||  ||||||||  | |||||||| |    
T  2154397 cactagtgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaatacactaatgcatgttaagttgcgtagggacattttgatcttttactttgg 2154298  T
Q  241 gaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||| | ||||| ||||||||||||||    
T  2154297 gaatgagcgatattgtttgggtaatgagcagaatt 2154263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 12967407 - 12967335
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgc 213  Q
    |||||||||||| ||||| |||||||| |||||||||||| | || || |||||  |||||||||||| ||||    
T  12967407 tacactagcgcaagttaagtcacgtagcgtgacttaacataggtacaaaatacagcagcgcatgttaacatgc 12967335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 30760211 - 30760155
Alignment:
Q  219 acattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||| |||||||||||||| |||||| |||| | |||| |||||||||||||||    
T  30760211 acattttagacatttactttagaaatgagtgatattgtttgaataatgagcagaatt 30760155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 11573689 - 11573634
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||| |||||||| ||||||||||||| | ||||| ||||||||||||||    
T  11573689 catttttgacttttactttgggaatgagcgatattgtttgggtaatgagcagaatt 11573634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 25678328 - 25678273
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||| ||||||||   ||||||||||||| ||||||||||||||||||||    
T  25678328 catttttgacttttactttgaaaatgagcgatactgtttggataatgagcagaatt 25678273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 37891758 - 37891691
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaa 208  Q
    |||||||| ||||||||| ||||||| |||||||||||||   || || |||||||||| ||||||||    
T  37891758 tacactagtgcatgttaagtcacgtaatgtgacttaacataagtacaaaatacactagcacatgttaa 37891691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 37893030 - 37893085
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||| |||||||| ||||||||||| || |||||| |||| |||||||||    
T  37893030 cattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaatt 37893085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 31 - 275
Target Start/End: Complemental strand, 28796864 - 28796621
Alignment:
Q  31 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| |||||||||||||||||| |    
T  28796864 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacgctcagaaaacactagcgcaagttaagtcacgctacgtgacttaacttagat 28796765  T
Q  131 nnnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggac 229  Q
              |||||||||||||||||| ||| |||| |||||||||||| ||||||| |||||||||||| |||||| ||||||| | |||||||||||    
T  28796764 --aaaaaaaatacactagcgcatgttaagtcatgtagcgtgacttaacatagataaaaaatacactagcgcgtgttaacatgcacatggacattttggac 28796667  T
Q  230 atttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||  |||||||||||| | ||||| ||||||||||||||    
T  28796666 atttactttgagaatgagcgatattgtttgggtaatgagcagaatt 28796621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 47043824 - 47044066
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  || |||||||||||||||| |||||||||||||| |||||||||||||||     
T  47043824 gtttgttcttcagttctgcaccggccaactggcgcgagttaactcacgctccgaatacactagcgcaacttaagtcacactacatgacttaacttaggt- 47043922  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgat-aaaatatacactagcgcatgttaatatgcaca-gaacattttggac 229  Q
             |||||||||||||||||| |||||||| | |||||||||| | | |||| |||||||||| |||||||| |||| || |  ||||||| |     
T  47043923 --taaaaaatacactagcgcatgttaactcacgtagcgcgacttaacataggtaaaaaaatacactagcacatgttaacatgcgcaggggcattttgaat 47044020  T
Q  230 atttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||| ||||||  ||||  ||||||||| ||||    
T  47044021 atttactttaggaatgaacgatacagtttgagtaatgagcaaaatt 47044066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 53266034 - 53265809
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||     
T  53266034 gtttgttcttcagttctgcaccggccaactagcgtgagttaactcacgctcagaacacactagcgcaagttaagtcacgctacgtgacttaacttaggt- 53265936  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatac-actagcgcatgttaatatgcaca-gaacattttggac 229  Q
             |||||||||||||||||| |||||||| ||||||||||||   || ||  ||| ||||||||||||||| ||||  | || |||||||||     
T  53265935 ---ataaaatacactagcgcatgttaagtcacgtagcgtgacttaacataagtacaaattacaactagcgcatgttaacatgcgtaggagcattttggaa 53265839  T
Q  230 atttactttaggaatgagcgatactatttg 259  Q
     |||||||||||||||||||| || |||||    
T  53265838 ttttactttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 42099393 - 42099491
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  42099393 gtttgttcttcagttctgcaccggccaactggcgcgagttaactcacgttcagaatacactagcgcaacttaagtcacgctacgtgacttaacttaggt 42099491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 12572609 - 12572512
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||  |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  12572609 gtttgttcttcagttctgcaccggccaactggcgtgagttaactcacgctcagaatacactagcgcaag-taagtcacgctacgtgacttaacttaggt 12572512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 887034 - 887133
Alignment:
Q  31 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||||||||||||||| || ||||| ||||| ||| ||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  887034 tgtttgttcttcagttatgtaccggccaactagcgtgagttaactcacgctcagaataaactagcgcaagttaagtcacgctacgtgacttaacttaggt 887133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 33161871 - 33161794
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||  ||||||||||| |||||||||||||||||    
T  33161871 gtttgttcttcagttctgcaccggccaactagcgtgagttaactcacgctcagaatacaccagcgcaagttaagtcac 33161794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 46814096 - 46814019
Alignment:
Q  31 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtca 108  Q
    |||||||||||||| |||||||||| ||||| ||| ||||||||||||  |||||||||||||||  |||||||||||    
T  46814096 tgtttgttcttcagctctgcaccgggcaactagcgtgagttaactcacgctcagaatacactagcataagttaagtca 46814019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 33161766 - 33161646
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgtta--atatgcacagaacattttggacatttacttt 238  Q
    |||||||||||||||||| |||| ||| |||||||||||| | ||||| ||||||||| ||||||||  |||||||  |   |||||||| |||||||||    
T  33161766 tacactagcgcatgttaagtcacatagcgtgacttaacataggtaaaaaatacactagtgcatgttaacatatgca-ggggtattttggatatttacttt 33161668  T
Q  239 aggaatgagcgatactatttgg 260  Q
     ||||||| ||||||| |||||    
T  33161667 gggaatgaacgatactctttgg 33161646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 36174415 - 36174492
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    |||| ||||||||||||||||| | ||||| | | ||||||||||||  |||||||||||||| ||||||||||||||    
T  36174415 gtttcttcttcagttctgcacctgccaactagtgtgagttaactcacgctcagaatacactagtgcaagttaagtcac 36174492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 28798167 - 28798222
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||    
T  28798167 cattttggacatttactttgagaatgagcgatactgtttgggtaatgagcagaatt 28798222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 46813988 - 46813917
Alignment:
Q  143 cactagcgcatgttaaatcacgtagtgtgacttaacattgat-aaaatatacactagcgcatgttaatatgc 213  Q
    |||||||||||||||| ||| |||| |||||||||||| ||| |||| |||||||| |||||||||||||||    
T  46813988 cactagcgcatgttaagtcatgtagcgtgacttaacatagataaaaaaatacactaacgcatgttaatatgc 46813917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 37577273 - 37577317
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  37577273 tttactttaggaatgagcgaaattatttggataatgagcagaatt 37577317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 12572484 - 12572429
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| |||| |||||||||    
T  12572484 cattttggacatttactttgggaatgagcaatactgtttggctaataagcagaatt 12572429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 12572841 - 12572896
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||||||  |||||| ||||||| ||||||| ||||||||||||    
T  12572841 cattttggacatttactttgagaatgaacgatactgtttggatgatgagcagaatt 12572896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 24972444 - 24972391
Alignment:
Q  222 ttttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||| ||| |||||||||||||||||||||||| ||| | ||||||||||||||    
T  24972444 tttttgacttttactttaggaatgagcgatactgtttaggtaatgagcagaatt 24972391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 33161784 - 33161723
Alignment:
Q  69 gttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||||||||  |||||||||||||||||| |||||||||||   ||||||||||| |||||    
T  33161784 gttaactcacgctcagaatacactagcgcatgttaagtcacatagcgtgacttaacataggt 33161723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 628133 - 628089
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||||||| || |||||| ||||||||||||||    
T  628133 tttactttaggaatgagcgaaaccatttgggtaatgagcagaatt 628089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 36174502 - 36174542
Alignment:
Q  69 gttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  36174502 gttaactcacgctcagaatacactagcgcaagttaagtcac 36174542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 33164527 - 33164582
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||||||  |||||||||  || |||||| ||||||||||||||    
T  33164527 cattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaatt 33164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 40450987 - 40450932
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||| |||||||| ||||||||||||||| ||| | ||||||||||||||    
T  40450987 cattttcgacttttactttgggaatgagcgatactgtttaggtaatgagcagaatt 40450932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 46817454 - 46817509
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||| |||||||||||| |||||||||||||| ||  | ||||||||||||||    
T  46817454 cattttgaacatttactttaagaatgagcgatactgttcaggtaatgagcagaatt 46817509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 55312126 - 55312075
Alignment:
Q  219 acattttggacatttactttaggaatgagcgatactatttggataatgagca 270  Q
    |||||||||| ||||||||| |||||||||||| | ||||| ||||||||||    
T  55312126 acattttggatatttactttgggaatgagcgattccatttgaataatgagca 55312075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 36172220 - 36172166
Alignment:
Q  221 attttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||| |||||||| |||||||| |  ||||||||| ||||||||||||||    
T  36172220 attttggacttttactttgggaatgagtggaactatttgggtaatgagcagaatt 36172166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 36498951 - 36498907
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| ||||||||||||||| ||||  ||||||||||||||    
T  36498951 tttactttgggaatgagcgatactgtttgagtaatgagcagaatt 36498907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 42099549 - 42099597
Alignment:
Q  221 attttggacatttactttaggaatgagcgatactatttggataatgagc 269  Q
    |||||||||||||||||| | ||||||||||| | |||| |||||||||    
T  42099549 attttggacatttactttggaaatgagcgatattgtttgaataatgagc 42099597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 1974397 - 1974157
Alignment:
Q  33 tttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtnn 132  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||        
T  1974397 tttgttcttcggttctgcaccggccaactggcgcaagttaactcacgctcagaatacactagcgcaacttaagtcacactacgtgacttaacttag---a 1974301  T
Q  133 nnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcac-agaacattttggacat 231  Q
            |||||||||||||||||| |||| || || |||||||||| | ||||| ||||||||||||||||||| |||| | ||| ||||||||||||    
T  1974300 caacaaaatacactagcgcatgttaagtcacataatgcgacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaagagcattttggacat 1974201  T
Q  232 ttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||| ||||||||||||||||| ||| ||||||||| ||||    
T  1974200 ttactttgggaatgagcgatactatctgggtaatgagcataatt 1974157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 40017188 - 40017432
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||     
T  40017188 gtttgttcttcagttctgcaccggccaactgacgcgagttaactcacactcataatacactagcgcaagttaagtcacgctacgtgacttaacttaggt- 40017286  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgc-acagaacattttggaca 230  Q
             |||||||||| || |||| ||||||| ||||||| ||||| | ||||| |||||||||| ||||||||  |||   || ||||||| ||||    
T  40017287 --aaaaaaatacactagcgaattttaagtcacgtaatgtgactcaacataggtaaaaaatacactagcacatgttaacctgcgtaaggacattttagaca 40017384  T
Q  231 tttactttaggaatgagcgatactatttgg---ataatgagcagaatt 275  Q
    |||| ||| |||||||| |||||| |||||   |||||||||||||||    
T  40017385 tttattttgggaatgagtgatactctttgggtaataatgagcagaatt 40017432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 3461419 - 3461593
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||     
T  3461419 gtttgttctttagttctgcaccggccaactggcgtgagttaactcacgttcagaatacactaacgcaagttaagtcacgctacgtgacttaacttaggt- 3461517  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaa 208  Q
             |||| ||||| ||||||| |||||||  |||||||||||| | ||||| || ||||||| ||||||||    
T  3461518 -aaaaaaaatacattagcgtatgttaagtcacgtaacgtgacttaacataggtaaaaaatgcactagcacatgttaa 3461593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 1975116 - 1975215
Alignment:
Q  31 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||||||||||||||||||||||  |||| |||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  1975116 tgtttgttcttcagttctgcaccgaccaaccggcgcgagttaactcacgctcagaatacactagcgcaacttaagtcacgctacgtgacttaacttaggt 1975215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 19401836 - 19401929
Alignment:
Q  33 tttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaactt 126  Q
    |||||| |||||||||||||||| ||||| | | ||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19401836 tttgtttttcagttctgcaccggccaactagtgtgagttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaactt 19401929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 6270851 - 6270774
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||||  |||||||||||||||||||||||| ||||    
T  6270851 gtttgtttttcagttctgcaccggccaactggcgtgagttaactcacgctcagaatacactagcgcaagttaactcac 6270774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 4845357 - 4845302
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4845357 cattttagacatttactttaggaatgagcgatactatttgaataatgagcagaatt 4845302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 6270789 - 6270722
Alignment:
Q  63 gcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||| |||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  6270789 gcgcaagttaactcacgctcagaatacactagtgcaagttaagtcaccctacgtgacttaacttaggt 6270722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 28677933 - 28677887
Alignment:
Q  229 catttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  28677933 catttactttaggaatgagcgattccatttggataatgagcagaatt 28677887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 6269293 - 6269237
Alignment:
Q  219 acattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||| ||   ||||||||||||| ||||||||||||||||||||    
T  6269293 acattttggacatttacattgaaaatgagcgatactgtttggataatgagcagaatt 6269237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 1145197 - 1145142
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| |||||||||| ||||||||||| ||| ||||||||||||||| ||||    
T  1145197 cattttggtcatttactttgggaatgagcgaaactgtttggataatgagcataatt 1145142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 4846850 - 4846908
Alignment:
Q  33 tttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacac 91  Q
    ||||||||||||||||||||| |||||||||||||| | |||| ||  |||||||||||    
T  4846850 tttgttcttcagttctgcaccagtcaactggcgcgaatcaactaacgctcagaatacac 4846908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 1975324 - 1975379
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||||| | ||||||| || || ||| ||||||||||||||||    
T  1975324 cattttggacatttactttggaaatgagcaatgctgtttagataatgagcagaatt 1975379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 5504792 - 5504737
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||| |||||||||||||||||||||| | ||||| ||||||| ||||||    
T  5504792 cattttcgacttttactttaggaatgagcgatagtgtttgggtaatgagtagaatt 5504737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 33144206 - 33144261
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||| || |||||||||||||||||||||||| | ||||| |||||| |||||||    
T  33144206 catttcggtcatttactttaggaatgagcgatattgtttgggtaatgaacagaatt 33144261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 14830634 - 14830409
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||  ||||||||||||     
T  14830634 gtttgttcttcagttctgcaccggccaactggcgcgagttaactcacgctcagaatacactagcgcaagttaaatcacgctacgtttcttaacttaggt- 14830536  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggaca 230  Q
             |||||||||||||||||| |||||||| |||||||||||| | ||||| ||||||||||||||||||| |||   | | ||||||||||||    
T  14830535 --aagaaaatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaatacactagcgcatgttaacatgtgtagggacattttggaca 14830438  T
Q  231 tttactttaggaatgagcgatactatttg 259  Q
    |||||||| ||||||||||||||| ||||    
T  14830437 tttactttgggaatgagcgatactgtttg 14830409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 14153596 - 14153355
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||  ||||| ||||||||||||| ||||||||| |||||||||||| |||| ||     
T  14153596 gtttgttcttcagttctgcaccggccaactagcgcgagttaactcacgctcagactacactagcgcaacttaagtcacgctacgtgacttagcttaagt- 14153498  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggaca 230  Q
             |||||||||||||||||| |||||||| | |||| ||||| | ||||| ||||||||||||||||||| ||||  | |   ||||||| ||    
T  14153497 --taaaaaatacactagcgcatgttaagtcacgtagcgcgactaaacataggtaaaaaatacactagcgcatgttaacatgcgtaggggtattttggtca 14153400  T
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| ||||||||| | |  |||||| ||||||||||||||    
T  14153399 tttactttgggaatgagcaaaatcatttgggtaatgagcagaatt 14153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 14154376 - 14154443
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaa 99  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||| ||||    
T  14154376 gtttgttcttcagttctgcaccggccaactggtgcgagttaactcacgctcagaatacactagtgcaa 14154443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 268
Target Start/End: Complemental strand, 16444510 - 16444276
Alignment:
Q  31 tgtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||||||  ||| || ||||||| ||||||||||||||    | |   |||||||| |     
T  16444510 tgtttgttcttcagttctgcaccggccaactagcgtgagttaactcacgctca-aaaacactagtgcaagttaagtcacgtagcttaggttaacttacg- 16444413  T
Q  131 nnnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggac 229  Q
              |||| ||||||||||||| ||| |||| || ||||||||| | ||||| ||||||||||||||||||| |||| || |  |||||||||     
T  16444412 ---ctcaaaatacattagcgcatgttaagtcatgtagcgtaacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaggggcattttggat 16444316  T
Q  230 a-tttactttaggaatgagcgatactatttggataatgag 268  Q
    | |||||||||| |||||| |||||| ||||| |||||||    
T  16444315 attttactttagaaatgagtgatactgtttgggtaatgag 16444276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 14154482 - 14154542
Alignment:
Q  70 ttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  14154482 ttaactcacgctcagaatacactagtgcaacttaagtcacactacgtgacttaacttaggt 14154542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 807192 - 807246
Alignment:
Q  221 attttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| |||||||||||||||||||||||  |||||||||||| ||||||||||    
T  807192 attttgtacatttactttaggaatgagcgaatctatttggataaagagcagaatt 807246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 35053549 - 35053468
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcg----cgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    ||||||||||||||||||||  || ||||| ||     |||||||||||||  |||||||||||||||||||||||||||||    
T  35053549 gtttgttcttcagttctgcattggccaactagcatgatcgagttaactcacgctcagaatacactagcgcaagttaagtcac 35053468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 14154598 - 14154654
Alignment:
Q  219 acattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||| |||||||||||||||| |  ||||| |||||| |||||||    
T  14154598 acattttggacatttattttaggaatgagcgattcggtttgggtaatgatcagaatt 14154654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 39650440 - 39650197
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||||| ||  ||||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||     
T  39650440 gtttgttcttcagttctgcaccggccaactagcatgagttaactcacgctcagaatacactagagcaagttaagtcacgctacgtgacttaacttaggt- 39650342  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggaca 230  Q
             |||||||||||||||||| |||||||| |||||||||||| | || || ||||||||||||||||||| ||||  | |  |||||||||||    
T  39650341 aaaaaaaaatacactagcgcatgttaagtcacgtagcgtgacttaacataggtagaaaatacactagcgcatgttaacatgcgtaggggcattttggaca 39650242  T
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||||||| || |||| | ||||||||||||||    
T  39650241 tttactttaggaatgagcgaaaccatttaggtaatgagcagaatt 39650197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 47485629 - 47485489
Alignment:
Q  34 ttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtnnn 133  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||       
T  47485629 ttgttcttcagttctgcaccggccaactggtgcgagttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggt--a 47485532  T
Q  134 nnnnnnntacactagcgcatgttaaatcacgtagtgtgactta 176  Q
           |||||||||||||||||| || ||||||||||||||    
T  47485531 aaaaaaatacactagcgcatgttaagtcgcgtagtgtgactta 47485489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 50065705 - 50065609
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttag 128  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||   ||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  50065705 gtttgttcttcagttctgcaccggccaacctgcgtgagttaactcatgctcagaatgcactagcgcaagttaagtcacgctacatgacttaacttag 50065609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 50069256 - 50069311
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||    
T  50069256 cattttggacatttactttgggaatgagcgatgctgtttgggtaatgagcagaatt 50069311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 3792616 - 3792561
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||| |||||||| | ||||||||| ||||||||| ||||||||||||||    
T  3792616 cattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaatt 3792561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 11821216 - 11821161
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||| |||||||| ||||||| ||| || |||||||||||||||||||||    
T  11821216 cattttggacttttactttgggaatgaacgaaaccatttggataatgagcagaatt 11821161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 49033755 - 49033807
Alignment:
Q  223 tttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||| ||||||||||  || ||||| |||||||||||||||    
T  49033755 tttggacatttactttgggaatgagcggaaccatttgaataatgagcagaatt 49033807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 5119054 - 5119108
Alignment:
Q  221 attttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||| |||||||||||||||||||||| | ||  ||||||||| ||||||||||    
T  5119054 attttagacatttactttaggaatgagcaaaaccgtttggataaagagcagaatt 5119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 50065565 - 50065479
Alignment:
Q  190 atacactagcgcatgttaatatgcacagaa-cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||| ||||||||| |||| ||||  ||||| || |||||||||| |||||||||||| | |||| | ||||||| ||||||    
T  50065565 atacactagtgcatgttaacatgcgcagaggcatttcggtcatttactttgggaatgagcgattccattttggtaatgagtagaatt 50065479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 3792475 - 3792531
Alignment:
Q  219 acattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||| ||||| || | ||||||||| || |||||||||||||||| ||||    
T  3792475 acattttggacttttacgttggaaatgagcgaaaccatttggataatgagcataatt 3792531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 53824534 - 53824292
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||     
T  53824534 gtttgttcttcagttctgcaccggccaactggcgcgagttaactcacgctcagaatacactagcgcaacttaagtcacgctacgtgacttaacttaggt- 53824436  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggaca 230  Q
             |||||||||||||||||| |||||||| |||||||||||| | |||||  |||||||||||||||||| |||| || |  |||||  | ||    
T  53824435 aaaaaaaaatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaattacactagcgcatgttaacatgcgcatgggcatttcagtca 53824336  T
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| ||||||||| || | |||||| |||| |||||||||    
T  53824335 tttactttgggaatgagc-attccatttgggtaataagcagaatt 53824292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 35485487 - 35485244
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||||||||| |||||||||| |||||| |||||||||||||     
T  35485487 gtttgttctttagttctgcaccgaccaactggcgcgagttaactcacgctcagaatacactagcgcaggttaagtcacgctacgtaacttaacttaggt- 35485389  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattg--ataaaatatacactagcgcatgttaatatgcaca-gaacattttgga 228  Q
             |||||||||||||||||| |||||||  |||||||||||| |  | |||| ||| ||||||||||||||| |||  || |  ||||||  |    
T  35485388 --aaaaaaatacactagcgcatgttaagtcacgtaacgtgacttaacataggtaaaaaaaatatactagcgcatgttaacatgtgcaggggcattttaaa 35485291  T
Q  229 catttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  35485290 catttactttaagaatgagcgatactgtttggataatgagcagaatt 35485244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 16967815 - 16967962
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||     
T  16967815 gtttgttcttcagttctgcaccggccaactggcgcgagttaactcacgctcagaatacactagcgcaaattaagtcacgctacgtgacttaacttaggt- 16967913  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacat 180  Q
             |||||||||||||||||| |||||||| ||||||||||||    
T  16967914 aaaaaaaaatacactagcgcatgttaagtcacgtagcgtgacttaacat 16967962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 44833667 - 44833583
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgt 116  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  44833667 gtttgttcttcagttctgcaccggccaactagcgtgagttaactcacgctcagaatacactagcgcaagttaagtcacgctacgt 44833583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 2325447 - 2325541
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaactt 126  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||  ||| ||||||||||||||||||||||||| ||| ||||| ||||||    
T  2325447 gtttgttcttcagttctgcaccggccaactagcgtgagttaactcacgctcaaaatacactagcgcaagttaagtcacgctatgtgacataactt 2325541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 42993755 - 42993680
Alignment:
Q  33 tttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  42993755 tttgttcttcagttctgcaccgc-caactggcgcgagttaactcacgctcagaatacactagtgcaagttaagtcac 42993680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 42387765 - 42387840
Alignment:
Q  34 ttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    |||||||||||||||||||||| ||||| ||| |||||||||| |  |||||||||||||||||||||||||||||    
T  42387765 ttgttcttcagttctgcaccggccaactagcgtgagttaactcccgctcagaatacactagcgcaagttaagtcac 42387840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 42947607 - 42947536
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagtta 103  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  42947607 gtttgttcttcagttctgcaccggccaactagcgtgagttaactcacgctcagaatacactagcgcaagtta 42947536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 16931524 - 16931447
Alignment:
Q  199 cgcatgttaatatgcacaga-acattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||| |||| |||| | || |||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  16931524 cgcatgttaacatgcgcagagatatattggacatttactttaggaacgagcgatactatttgaataatgagcagaatt 16931447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 277
Target Start/End: Complemental strand, 42993702 - 42993565
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggacatttacttta 239  Q
    |||||||| ||| ||||| |||||||| ||||||| |||| | | ||| ||||||||||||||||||| || | || |  ||||| ||| |||||||||     
T  42993702 tacactagtgcaagttaagtcacgtagcgtgactttacataggttaaaaatacactagcgcatgttaacatacgcaggggcatttaggaaatttactttg 42993603  T
Q  240 ggaatgagcgatactatttggataatgagcagaattat 277  Q
    ||||||||||||||| ||| | || |||||||||||||    
T  42993602 ggaatgagcgatactctttaggtagtgagcagaattat 42993565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 53827683 - 53827738
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  53827683 cattttggacatttactttgggaatgagcgatactatttaggtaatgagcagaatt 53827738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 42387868 - 42387936
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgat-aaaatatacactagcgcatgttaa 208  Q
    |||||||||||||||||| |||||||| |||||||||||| | | |||| |||||||||||||||||||    
T  42387868 tacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaatacactagcgcatgttaa 42387936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 42994917 - 42994972
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| |||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  42994917 cattttagacatttactttgggaatgagcgatactatttaggtaatgagcagaatt 42994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 19866789 - 19866729
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaattattat 280  Q
    |||||| ||| |||||||| ||||||||||||||| ||||| |||||||||||||| ||||    
T  19866789 catttttgacttttactttgggaatgagcgatactgtttgggtaatgagcagaattcttat 19866729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 42947512 - 42947376
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatac-actagcgcatgttaatatgcaca-gaacattttggacatttacttt 238  Q
    |||||||||||||||||||||| |||| ||||||||||||   || |   ||| ||||||||||||||| ||||  | || |||||||||| ||||||||    
T  42947512 tacactagcgcatgttaaatcaggtagcgtgacttaacataagtacatattacaactagcgcatgttaacatgcgtaggagcattttggacttttacttt 42947413  T
Q  239 aggaatgagcgatactatttggataatgagcagaatt 275  Q
      ||||||| || |  |||| | ||||||||||||||    
T  42947412 gagaatgagtgaaatcatttaggtaatgagcagaatt 42947376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 6162704 - 6162759
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||| |||||||| ||||||||||  || |||||| ||||||||||||||    
T  6162704 cattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaatt 6162759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 15042028 - 15042083
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||| |||||||| ||||||||||||| | ||||| ||||||||||||||    
T  15042028 cattttcgacttttactttgggaatgagcgatattgtttgggtaatgagcagaatt 15042083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 34086862 - 34086916
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||| |||||||| ||||||||||||||| |||||| |||||||||||||    
T  34086862 cattttcgacttttactttgggaatgagcgatactgtttgga-aatgagcagaatt 34086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 44836505 - 44836555
Alignment:
Q  225 tggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||||||||||| ||||||||  || |||| ||||||||||||||||    
T  44836505 tggacatttactttagaaatgagcggaaccatttagataatgagcagaatt 44836555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 42387850 - 42387911
Alignment:
Q  69 gttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||||||||  |||||||||||||||||| ||||||||||    ||||||||||| |||||    
T  42387850 gttaactcacgctcagaatacactagcgcatgttaagtcacgtagcgtgacttaacataggt 42387911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 48086783 - 48086824
Alignment:
Q  85 aatacactagcgcaagttaagtcacactacgtgacttaactt 126  Q
    ||||| || ||||||||||||||||||| |||||||||||||    
T  48086783 aatacccttgcgcaagttaagtcacactgcgtgacttaactt 48086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| ||||||||||| || |||||| ||||||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 44430463 - 44430419
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| ||||||||| | || |||||||||||||||||||||    
T  44430463 tttactttgggaatgagcaaaaccatttggataatgagcagaatt 44430419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 1537082 - 1537323
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||  |||| |||||||||  ||| ||||||||| ||| |||||||||||| |||     
T  1537082 gtttgttcttcagttctgcaccggccaattggcgcgagttaactcacgctcagcatacactagttcaaattaagtcacgctatgtgacttaactttggtc 1537181  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggaca 230  Q
             ||||| |||| ||||||| | |||||| |||||||||||| | ||||| ||||||||||||||||||| |||| || |  ||||||| |||    
T  1537182 aaaaaa---tacaccagcgtatgttaagtaacgtagcgtgacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaggggcattttgaaca 1537278  T
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||  |||||| ||||||| ||||| ||||||||||||||    
T  1537279 tttactttgagaatgaacgatactgtttgggtaatgagcagaatt 1537323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 31826066 - 31826157
Alignment:
Q  35 tgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttag 128  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31826066 tgttcttcaattctgcaccggtcaactggcgcgagttaactcac--tcagaatacactagcgcaagttaagtcacgctacgtgacttaacttag 31826157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 32 - 258
Target Start/End: Complemental strand, 48212022 - 48211798
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggtn 131  Q
    ||||||||||||||| ||||||   ||||||| ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||     
T  48212022 gtttgttcttcagttatgcaccaaccaactggtgcgagttaactcacgctcagaatacactagcgcaagttaagtcatactacgtgacttaacttaggt- 48211924  T
Q  132 nnnnnnnnntacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggaca 230  Q
             |||||||||||||||||| |||||||    |  |||||||   ||||| |||||||| | |||||||| |||| || | |||||||  | |    
T  48211923 --aagaaaatacactagcgcatgttaagtcacgtaacacggtttaacataagtaaaaaatacactaacacatgttaacatgcgcatggacattttaaaaa 48211826  T
Q  231 tttactttaggaatgagcgatactattt 258  Q
    ||||||||||||||||||||||| ||||    
T  48211825 tttactttaggaatgagcgataccattt 48211798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 38791088 - 38790995
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||||||||||||||| |||| | ||||| ||| ||     |||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38791088 gtttgttcttcagttctacaccagccaactagcgtga-----ctcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggt 38790995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 46302425 - 46302352
Alignment:
Q  57 caactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    ||||| ||| ||||||||||||  |||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  46302425 caactagcgtgagttaactcacgctcagaatacattagcgcaacttaagtcacgctacgtgacttaacttaggt 46302352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 26502266 - 26502343
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    ||||||||||||||||||| |||| ||| | ||  |||||||||| |  | |||||||||||||||||||||||||||    
T  26502266 gtttgttcttcagttctgccccggccaagtagcatgagttaactcgcgctaagaatacactagcgcaagttaagtcac 26502343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 26590448 - 26590371
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcac 109  Q
    ||||||||||||||||||| |||| ||| | ||  |||||||||| |  | |||||||||||||||||||||||||||    
T  26590448 gtttgttcttcagttctgccccggccaagtagcatgagttaactcgcgctaagaatacactagcgcaagttaagtcac 26590371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 30362819 - 30362954
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgcaca-gaacattttggacatttacttta 239  Q
    ||||||||||||| |||| |||||||  ||||||||||||   || |  |||||||||| ||||||||  ||| || || ||||||| || |||||||||    
T  30362819 tacactagcgcatcttaagtcacgtaacgtgacttaacataagtacataatacactagcacatgttaagttgcgcatgagcattttgaacttttacttta 30362918  T
Q  240 ggaatgagcgatactatttggataatgagcagaatt 275  Q
     |||||||||| || ||||  |||| ||||||||||    
T  30362919 agaatgagcgaaacgatttaaataaagagcagaatt 30362954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 42548247 - 42548162
Alignment:
Q  190 atacactagcgcatgttaatatgcacagaacattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||| ||||||||||||||  ||| ||  | ||||||||| |||||||| ||||||||| | || |||||| ||||||||||||||    
T  42548247 atacgctagcgcatgttaagttgcgcatgaaattttggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaatt 42548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 31823645 - 31823590
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||| ||||| ||| ||||||||||||| | ||||| ||||||||||||||    
T  31823645 cattttggatatttattttgggaatgagcgatattgtttgggtaatgagcagaatt 31823590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 40917756 - 40917721
Alignment:
Q  240 ggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40917756 ggaatgagcgatactatttgggtaatgagcagaatt 40917721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 31853294 - 31853348
Alignment:
Q  221 attttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||| |||||| ||||  ||||||||  ||||||||||||||||||||||||    
T  31853294 attttggtcatttattttaaaaatgagcggaactatttggataatgagcagaatt 31853348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 20379690 - 20379750
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaattattat 280  Q
    |||||||||| |||||||| ||||||||||  || |||| ||||||||||| |||| ||||    
T  20379690 cattttggacttttactttgggaatgagcggaaccatttagataatgagcataattcttat 20379750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 44552071 - 44552027
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||| |||| |||||||||| || |||||||||||||||||||||    
T  44552071 tttattttaagaatgagcgaaaccatttggataatgagcagaatt 44552027  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 28704084 - 28703986
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  28704084 gtttgttcttcaattctgcaccggccaactggcgcgagttaactcacgctcagaatacactagcgcaagttaaatcacgctacgtgacttaacttaggt 28703986  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 4640737 - 4640804
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaa 208  Q
    |||||||||||||||||| ||||| || ||| ||||||||   ||||| |||||||||||||||||||    
T  4640737 tacactagcgcatgttaagtcacgaagcgtggcttaacatatgtaaaaaatacactagcgcatgttaa 4640804  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 33800520 - 33800575
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| |||||||||||||||||||||||||||| |||  ||||||||| |||||    
T  33800520 cattttagacatttactttaggaatgagcgatactgtttaaataatgagcggaatt 33800575  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 28703937 - 28703882
Alignment:
Q  220 cattttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||| |||   ||||||||||| ||||||| ||||||||||||||    
T  28703937 cattttggacatttatttttaaaatgagcgatattatttgggtaatgagcagaatt 28703882  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 33220078 - 33220025
Alignment:
Q  221 attttggacatttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||| ||||||||||| ||||||||||  || |||||||||||||||||||||    
T  33220078 attttgaacatttacttt-ggaatgagcggaaccatttggataatgagcagaatt 33220025  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 9418632 - 9418588
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| ||||||||||| || |||||| ||||||||||||||    
T  9418632 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 9418588  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 43635266 - 43635194
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaatatgc 213  Q
    |||||||||||||||||| ||||| || || |||||||||   || ||  |||||||||||||||||| ||||    
T  43635266 tacactagcgcatgttaagtcacgaagcgtaacttaacataagtacaaattacactagcgcatgttaacatgc 43635194  T

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Target: scaffold1455 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 210 - 308
Alignment:
Q  32 gtttgttcttcagttctgcaccggtcaactggcgcgagttaactcacattcagaatacactagcgcaagttaagtcacactacgtgacttaacttaggt 130  Q
    |||||||||||||||||||||||| ||||| | | |||||||||| |  | |||||||||||||||||||||||||||    ||||||||||| |||||    
T  210 gtttgttcttcagttctgcaccggccaactagtgtgagttaactcgcgctaagaatacactagcgcaagttaagtcacgtagcgtgacttaacataggt 308  T

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Target: scaffold1455; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 265 - 332
Alignment:
Q  141 tacactagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgttaa 208  Q
    |||||||||||| ||||| |||||||| |||||||||||| | || || |||||| ||||||| ||||    
T  265 tacactagcgcaagttaagtcacgtagcgtgacttaacataggtacaaaatacaccagcgcatattaa 332  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 55339 - 55374
Alignment:
Q  240 ggaatgagcgatactatttggataatgagcagaatt 275  Q
    ||||||||||||||||||||| ||||||||||||||    
T  55339 ggaatgagcgatactatttgggtaatgagcagaatt 55374  T

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Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 24398 - 24442
Alignment:
Q  231 tttactttaggaatgagcgatactatttggataatgagcagaatt 275  Q
    |||||||| ||||||||||||||| ||||  ||||||||||||||    
T  24398 tttactttgggaatgagcgatactgtttgagtaatgagcagaatt 24442  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 69905 - 69844
Alignment:
Q  144 actagcgcatgttaaatcacgtagtgtgacttaacattgataaaatatacactagcgcatgt 205  Q
    ||||||||| ||||| ||||||||||||||||||||| | |  || ||||||| ||||||||    
T  69905 actagcgcaagttaagtcacgtagtgtgacttaacataggttcaaaatacacttgcgcatgt 69844  T

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