View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_high_7 (Length: 580)

Name: NF12968_high_7
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_high_7
NF12968_high_7
[»] chr4 (2 HSPs)
chr4 (18-349)||(54180011-54180342)
chr4 (379-566)||(54180372-54180559)
[»] chr3 (3 HSPs)
chr3 (46-349)||(1211060-1211366)
chr3 (386-522)||(1210881-1211023)
chr3 (84-151)||(38102604-38102671)
[»] chr5 (8 HSPs)
chr5 (24-349)||(41948307-41948635)
chr5 (46-349)||(41942793-41943099)
chr5 (40-215)||(22794935-22795110)
chr5 (249-349)||(22794822-22794922)
chr5 (386-522)||(41948128-41948270)
chr5 (454-556)||(22794597-22794699)
chr5 (407-451)||(22794720-22794764)
chr5 (408-451)||(41942691-41942734)
[»] chr7 (1 HSPs)
chr7 (102-175)||(39485527-39485600)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 54180011 - 54180342
Alignment:
Q  18 aggagcacagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaa 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180011 aggaacacagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaa 54180110  T
Q  118 tcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54180111 tcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaaacatccataacatgaacaggatcgccaca 54180210  T
Q  218 acgatctttggtataaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacatta 317  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180211 acgatctttgttataaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacatta 54180310  T
Q  318 ggccttggagcaccaacaaatgaaaacaaata 349  Q
    ||||||||||||||||||||||||||||||||    
T  54180311 ggccttggagcaccaacaaatgaaaacaaata 54180342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 379 - 566
Target Start/End: Original strand, 54180372 - 54180559
Alignment:
Q  379 gccacccaaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga 478  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180372 gccacccaaaaatttgagcatcattagtaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga 54180471  T
Q  479 catgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattctt 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180472 catgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattctt 54180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 46 - 349
Target Start/End: Complemental strand, 1211366 - 1211060
Alignment:
Q  46 taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta 145  Q
    ||||||||||||||| |||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||  |    
T  1211366 taggaaaatgccacaaatattgcttgtatgctgatagtggatgcaagaaaacaggaatacaacccgccaaaatcgaatcaaaaattgatcttctagtaaa 1211267  T
Q  146 agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatct---ttggtataaccataatag 242  Q
    |||||||||||||||||||||||||||||| ||||||  ||||  ||||||||| ||||||||||||| |||||  | |   ||  || |||||| |||     
T  1211266 agaatcccccggcggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcgacaactttttttcttactagaaccatgataa 1211167  T
Q  243 catccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaa 342  Q
    ||||||||| |||| |||| ||| ||||||||||||||||||||||||| ||| ||||||||||||| |  || ||||||||||||||| ||||||| ||    
T  1211166 catccaacacgtttacaactcttagaagattcgcaatgttcgattaactgatttctaatagaagatggtgaatcaggccttggagcaccgacaaatgtaa 1211067  T
Q  343 acaaata 349  Q
    |||||||    
T  1211066 acaaata 1211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 522
Target Start/End: Complemental strand, 1211023 - 1210881
Alignment:
Q  386 aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcat---aac---cacatgattctattgataacatcgac 479  Q
    |||||||| | |||||||  ||| |||||||||||||||||||||||||| ||||||||| ||||   |||    ||||||||||||| | || |  |||    
T  1211023 aaaaatttcatcatcatttgtagcatgaaaataagttggatatggaattggaaattcattgtcatataaacatttacatgattctattaacaaaaatgac 1210924  T
Q  480 atgttacttgcttccggtaaaaacatcaactttgttccccaat 522  Q
    ||||||||| |||| || || ||||| | ||||||||||||||    
T  1210923 atgttacttacttctggcaagaacattagctttgttccccaat 1210881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 38102671 - 38102604
Alignment:
Q  84 ggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatc 151  Q
    |||||||| || |||||||||||||| || ||||| ||||||||| ||||||| |||||||| |||||    
T  38102671 ggatgaaaaaacacaggaatacaaccagctaaaattgaatcaaaaattgatcttcttgtgtatgaatc 38102604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 24 - 349
Target Start/End: Complemental strand, 41948635 - 41948307
Alignment:
Q  24 acagagtagttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaat 123  Q
    |||||||| || ||||  ||| ||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||    
T  41948635 acagagtaattagaaccgtttttaggaaaatgccacaaatattgcttgtatgctgatagtggatgaaagaaaacaggaatacaacccgccaaaattgaat 41948536  T
Q  124 caaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaac-gat 222  Q
    ||||| ||||||  || ||  |||||||||||  ||||||||||||||| || ||||||  ||||  ||||||||| ||||||||||||| |||||  ||    
T  41948535 caaaaattgatcatctagtaaaagaatcccccatcggttgtaaacaaaataccgaattctgaaaattatccataacttgaacaggatcgcgacaacttat 41948436  T
Q  223 ct--ttggtataaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggc 320  Q
     |  ||  || |||||| ||| ||||||||| |||| |||| ||| |||||||||||||||| |||||||| ||| |||| |||||||| |  || ||||    
T  41948435 tttcttactagaaccatgataacatccaacacgtttacaactcttagaagattcgcaatgtttgattaactgatttctaacagaagatggtgaatcaggc 41948336  T
Q  321 cttggagcaccaacaaatgaaaacaaata 349  Q
    ||||||||||| ||||||| |||||||||    
T  41948335 cttggagcaccgacaaatgtaaacaaata 41948307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 46 - 349
Target Start/End: Complemental strand, 41943099 - 41942793
Alignment:
Q  46 taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta 145  Q
    ||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |||||||||||||||||  ||||||| || ||  |    
T  41943099 taggaaaatgccacaaatattgcttgtatgctgacagtggatgcaagaaaacaggaatacaacctgccaaaatcgaatcaaatattgatcttctagtaaa 41943000  T
Q  146 agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatct---ttggtataaccataatag 242  Q
    |||||||||   |||||||||||||||||| ||||||  ||||  ||||||||| |||||||||||||  ||||  | |   ||  || |||||| |||     
T  41942999 agaatccccaaccggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcggcaactttttttcttactagaaccatgataa 41942900  T
Q  243 catccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaa 342  Q
    |||| ||||| |||||||| ||| |||||||| ||||||| |||||||||||| |||||||||||||||  |||||| ||||||||||| ||||||||||    
T  41942899 catcgaacaaatttgcaactcttagaagattcacaatgtttgattaactcatttctaatagaagatgttgaattaggtcttggagcaccgacaaatgaaa 41942800  T
Q  343 acaaata 349  Q
    |||||||    
T  41942799 acaaata 41942793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 22795110 - 22794935
Alignment:
Q  40 tatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctcct 139  Q
    ||||| ||||||||||||||| ||||||||| || | ||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||    
T  22795110 tatttttaggaaaatgccacatatattgcttatacgctgaatgtggatgaaagaaaacaggaatacagccggccaaaatcgaatcaaaagttgatcttct 22795011  T
Q  140 tgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgcca 215  Q
     ||  ||||||| || || |||||||||||||||||||| |||  |||| |||||| ||||||||| |||||||||    
T  22795010 ggtaaaagaatcaccaggaggttgtaaacaaaaaactgatttctgaaaaacatccagaacatgaacgggatcgcca 22794935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 249 - 349
Target Start/End: Complemental strand, 22794922 - 22794822
Alignment:
Q  249 acaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaat 348  Q
    ||||||||||||| ||| |||||||  ||||| ||||||||||| || ||||| |||||||||| ||| |||||||||||||| ||||||||||||||||    
T  22794922 acaagtttgcaactcttagaagattgacaatgatcgattaactcgtttctaattgaagatgttaaatttggccttggagcaccgacaaatgaaaacaaat 22794823  T
Q  349 a 349  Q
    |    
T  22794822 a 22794822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 522
Target Start/End: Complemental strand, 41948270 - 41948128
Alignment:
Q  386 aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcat---aacc---acatgattctattgataacatcgac 479  Q
    |||||||| | |||||||  |||||||||||||||||||||||||||||| ||||||||| ||||   ||||   ||||||||||||| | || |  |||    
T  41948270 aaaaatttcatcatcatttgtaggatgaaaataagttggatatggaattggaaattcattgtcatataaacctttacatgattctattaacaaaaatgac 41948171  T
Q  480 atgttacttgcttccggtaaaaacatcaactttgttccccaat 522  Q
    ||||||||| |||| || || ||||| | ||||||||||||||    
T  41948170 atgttacttacttctggcaagaacattagctttgttccccaat 41948128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 454 - 556
Target Start/End: Complemental strand, 22794699 - 22794597
Alignment:
Q  454 cacatgattctattgataacatcgacatgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatc 553  Q
    |||| |||||||||  ||| ||||  |||||||| |||||||| | |||||| | |||||||||||||||||||| || ||| |||| ||| ||||||||    
T  22794699 cacacgattctattagtaaaatcgtaatgttactagcttccggcagaaacattagctttgttccccaatcttcatctttatcgcttcctctcctaaaatc 22794600  T
Q  554 ata 556  Q
    |||    
T  22794599 ata 22794597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 451
Target Start/End: Complemental strand, 22794764 - 22794720
Alignment:
Q  407 aggatgaaaataagttggatatggaattgaaaattcattatcata 451  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  22794764 aggatgaaaataagttggatatggaattgcaaattcattctcata 22794720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 41942734 - 41942691
Alignment:
Q  408 ggatgaaaataagttggatatggaattgaaaattcattatcata 451  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  41942734 ggatgaaaataagttggatatggaattggaaattcattgtcata 41942691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 39485527 - 39485600
Alignment:
Q  102 atacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaac 175  Q
    |||||||| ||||| |||||||||||||  ||||| ||||| |||||||| ||| | ||||| | |||||||||    
T  39485527 atacaaccagccaacatcgaatcaaaagcagatcttcttgtataagaatcaccctgaggttgaagacaaaaaac 39485600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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