View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_high_8 (Length: 545)
Name: NF12968_high_8
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 159 - 486
Target Start/End: Original strand, 40799391 - 40799719
Alignment:
| Q |
159 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttagcaaatttgaaaggccttttc |
258 |
Q |
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| T |
40799391 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttaggaaatttgaaaggccttttc |
40799490 |
T |
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| Q |
259 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcaaaaagttatgcctcg |
358 |
Q |
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| T |
40799491 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcagaaagttatgcgtcg |
40799590 |
T |
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| Q |
359 |
ttggcaatttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttg-ttttaaaaatcatat |
457 |
Q |
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| T |
40799591 |
ttggcaatttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgcttttaaaaatcatat |
40799690 |
T |
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| Q |
458 |
tccttctttgttgtgttaattattgttcc |
486 |
Q |
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| T |
40799691 |
tccttctttgttgtgttaattgttgttcc |
40799719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 40799233 - 40799328
Alignment:
| Q |
1 |
aaggggaaaagggaggaagaagatggaacaatttgatgtagcctattttcctccaccattaattaaagtgtttaaggtaaatgcaattatataggc |
96 |
Q |
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| T |
40799233 |
aaggggaaaagggaggaagaagatggaacaacttgatgtagcctattttcctcgaccattaattaaagtgtttaaggtaaatgcaattatataggc |
40799328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 40800724 - 40800767
Alignment:
| Q |
482 |
gttccacagaggaagccacttcttctaacggaacgaattacatg |
525 |
Q |
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| T |
40800724 |
gttccatagaggaagccacttcttctaacggtacgaattacatg |
40800767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 505
Target Start/End: Complemental strand, 2249574 - 2249446
Alignment:
| Q |
378 |
tttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgttttaaa-aatcatattccttctttgttgtgttaa |
476 |
Q |
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| T |
2249574 |
tttccttcaatttaacattaccatatttactataaacacttgcatacacgtgttccttatcttagttgtaaagaagtgtatttcttctttgttgttttaa |
2249475 |
T |
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| Q |
477 |
ttattgttccacagaggaagccacttctt |
505 |
Q |
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| T |
2249474 |
tttttgttccataaaggaagccacttctt |
2249446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 51035649 - 51035591
Alignment:
| Q |
447 |
aaaaatcatattccttctttgttgtgttaattattgttccacagaggaagccacttctt |
505 |
Q |
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| T |
51035649 |
aaaaaacatattccttctttgtagtgttaatttttgttccatagaggaagccacttctt |
51035591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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