View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_low_10 (Length: 523)

Name: NF12968_low_10
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_low_10
NF12968_low_10
[»] chr5 (5 HSPs)
chr5 (1-509)||(39952401-39952910)
chr5 (157-278)||(23920117-23920238)
chr5 (255-350)||(22917308-22917404)
chr5 (255-353)||(13596832-13596931)
chr5 (260-326)||(1685106-1685172)
[»] chr3 (3 HSPs)
chr3 (350-509)||(50416831-50416993)
chr3 (260-340)||(42614280-42614360)
chr3 (292-353)||(41053754-41053816)
[»] scaffold0001 (1 HSPs)
scaffold0001 (157-335)||(12729-12907)
[»] chr8 (6 HSPs)
chr8 (155-325)||(24847957-24848127)
chr8 (157-278)||(30344377-30344498)
chr8 (241-353)||(28940743-28940856)
chr8 (1-66)||(30339737-30339802)
chr8 (262-353)||(2680265-2680357)
chr8 (298-353)||(30344500-30344557)
[»] chr6 (11 HSPs)
chr6 (157-278)||(18985279-18985400)
chr6 (229-325)||(8746751-8746847)
chr6 (260-353)||(2627674-2627763)
chr6 (294-353)||(11681699-11681760)
chr6 (261-353)||(22978347-22978435)
chr6 (261-353)||(23809968-23810056)
chr6 (258-340)||(34218741-34218820)
chr6 (255-326)||(22721094-22721165)
chr6 (274-353)||(1363155-1363235)
chr6 (260-340)||(11168835-11168915)
chr6 (157-209)||(11682650-11682702)
[»] chr7 (8 HSPs)
chr7 (157-295)||(25350576-25350714)
chr7 (157-295)||(25356270-25356408)
chr7 (275-340)||(33097879-33097944)
chr7 (255-350)||(25731043-25731139)
chr7 (275-335)||(31299417-31299477)
chr7 (292-353)||(33105296-33105358)
chr7 (274-326)||(4478967-4479019)
chr7 (274-351)||(21895080-21895159)
[»] chr2 (5 HSPs)
chr2 (1-82)||(37222042-37222123)
chr2 (243-352)||(25123459-25123571)
chr2 (262-353)||(45003691-45003783)
chr2 (274-340)||(15084343-15084409)
chr2 (263-315)||(44800576-44800628)
[»] chr4 (5 HSPs)
chr4 (1-70)||(34230119-34230188)
chr4 (262-353)||(5482954-5483046)
chr4 (262-353)||(1694811-1694903)
chr4 (261-340)||(36678774-36678851)
chr4 (276-340)||(1967467-1967531)
[»] chr1 (3 HSPs)
chr1 (255-353)||(29693301-29693400)
chr1 (260-353)||(52037420-52037514)
chr1 (260-340)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 39952401 - 39952910
Alignment:
Q  1 atgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952401 atgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagta 39952500  T
Q  101 gattgaactctggttttgttggtgctctaatttcgctaatcacttcatttttgg-agcatctatatttatgctgcagtacattatgtatgtaatgacaat 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39952501 gattgaactctggttttgttggtgctttaatttcgctaatcacttcatttttggcagcatctatatttatgctgcagtacattatgtatgtaatgacaat 39952600  T
Q  200 aattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttc 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39952601 aattgttatgctatcttttatgccatgctttagaccatgcatcacaaatattcggattatgcgaccttcgttctcaaatttatgaaaaatggcaatgttc 39952700  T
Q  300 tgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttttgatggttaac 399  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39952701 tgtaatttgaacatctctccgttagagcaaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttgtgatggttaac 39952800  T
Q  400 atcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattga 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952801 atcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattga 39952900  T
Q  500 tgagaaagct 509  Q
    || |||||||    
T  39952901 tgtgaaagct 39952910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 157 - 278
Target Start/End: Original strand, 23920117 - 23920238
Alignment:
Q  157 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 256  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23920117 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 23920216  T
Q  257 tatgcgaccttcgttcccaaat 278  Q
    |||| ||||||||||| |||||    
T  23920217 tatgtgaccttcgttcacaaat 23920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 350
Target Start/End: Original strand, 22917308 - 22917404
Alignment:
Q  255 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaatt 350  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  22917308 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctatcctttagagcaaattttttaaaaattacgtaatt 22917404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 13596832 - 13596931
Alignment:
Q  255 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 353  Q
    ||||||| |||||||||| |||||||| |||  ||||||||||    |||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  13596832 attatgcaaccttcgttctcaaatttacgaagcatggcaatgtcgcataatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaa 13596931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 1685172 - 1685106
Alignment:
Q  260 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 326  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  1685172 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 1685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 350 - 509
Target Start/End: Complemental strand, 50416993 - 50416831
Alignment:
Q  350 tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat 449  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||    
T  50416993 tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat 50416894  T
Q  450 atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagct 509  Q
    ||||||||||| ||||||||| ||||||   ||||||||||||| |||||||||| |||||||    
T  50416893 atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagct 50416831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 42614360 - 42614280
Alignment:
Q  260 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    ||||||||||||| |||||||  ||| |||  |||||||  ||||||||||||||||| | ||| || |||||||||||||    
T  42614360 gcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatctcttctttaaagtaaatttttaaaaa 42614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 41053754 - 41053816
Alignment:
Q  292 caatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 353  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||| || |||||||||    
T  41053754 caatgttccgtaatttgaacatctcacatttagagcaaattttttaaaaaatatgtaattcaa 41053816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 157 - 335
Target Start/End: Original strand, 12729 - 12907
Alignment:
Q  157 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 256  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  12729 catctacatttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttttatgccatgccttagatcatgcatcacaaatattcggat 12828  T
Q  257 tatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 335  Q
    ||||||||||||||||  ||||||| ||| ||||||||| ||   | |||||||||||||||| |||||| || |||||    
T  12829 tatgcgaccttcgttcttaaatttacgaagaatggcaatatttcctcatttgaacatctctcctttagagtaatttttt 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 24848127 - 24847957
Alignment:
Q  155 agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcgg 254  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||  |||||||| ||||||| |||  |||  ||||||||||||||  ||||||||||    
T  24848127 agcatctatatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttgatgttatgccttagaccatgcatcgtaaatattcgg 24848028  T
Q  255 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 325  Q
    |||||||||||||||||| |||||||| ||| |||| ||||||| | |||||||||||||||||| |||||    
T  24848027 attatgcgaccttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 157 - 278
Target Start/End: Original strand, 30344377 - 30344498
Alignment:
Q  157 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 256  Q
    ||||||||||| || || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30344377 catctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatgtcttagaccatgcatcacaaatattcggat 30344476  T
Q  257 tatgcgaccttcgttcccaaat 278  Q
    |||| ||||||| ||| |||||    
T  30344477 tatgtgaccttcattcacaaat 30344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 28940856 - 28940743
Alignment:
Q  241 tcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaa 339  Q
    |||||||||||| ||||||| |||||| |||| ||| |||| ||| |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  28940856 tcacaaatattcagattatgggacctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttagaacaaattttttaaaa 28940757  T
Q  340 agtacgtaattcaa 353  Q
    ||||||||||||||    
T  28940756 agtacgtaattcaa 28940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30339737 - 30339802
Alignment:
Q  1 atgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatc 66  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30339737 atgtttgacaagttataacaggtcagtagtatctcaaactcttgctgattattgtttttgtatatc 30339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 2680357 - 2680265
Alignment:
Q  262 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttta-aaaagtacgtaattcaa 353  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2680357 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 2680265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 30344500 - 30344557
Alignment:
Q  298 tctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattcaa 353  Q
    |||||||||||||||||||||| ||||||| ||  ||||| |||| ||||||||||||    
T  30344500 tctgtaatttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaa 30344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 18985400 - 18985279
Alignment:
Q  157 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 256  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18985400 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 18985301  T
Q  257 tatgcgaccttcgttcccaaat 278  Q
    |||| ||||||||||| |||||    
T  18985300 tatgtgaccttcgttcacaaat 18985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 8746847 - 8746751
Alignment:
Q  229 ttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 325  Q
    ||||||||| ||||  |||||||| |||||||||||||| |||| |||||||| ||| |||| ||||||||  ||||||||||||| |||| |||||    
T  8746847 ttagaccatacatcgtaaatattcagattatgcgacctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 2627763 - 2627674
Alignment:
Q  260 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 353  Q
    ||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  2627763 gcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 2627674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 11681760 - 11681699
Alignment:
Q  294 atgttctgtaatttgaacatctctccattagagcaaattttt--aaaaagtacgtaattcaa 353  Q
    |||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||    
T  11681760 atgttctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaa 11681699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 353
Target Start/End: Complemental strand, 22978435 - 22978347
Alignment:
Q  261 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 353  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  22978435 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 22978347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 23809968 - 23810056
Alignment:
Q  261 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 353  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  23809968 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 23810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 34218741 - 34218820
Alignment:
Q  258 atgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    ||||||||||||||  | |||||||||| |||  |||| ||| ||||||||||||||||||| |   ||||||||||||||||    
T  34218741 atgcgaccttcgttttcgaatttatgaagaattacaatattccgtaatttgaacatctctcctt---agcaaatttttaaaaa 34218820  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 22721094 - 22721165
Alignment:
Q  255 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 326  Q
    ||||||| |||| ||||| |||||| | ||| |||||||||||   ||||||||||||||||||| ||||||    
T  22721094 attatgcaacctacgttctcaaattaacgaagaatggcaatgtcgcgtaatttgaacatctctcctttagag 22721165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 1363155 - 1363235
Alignment:
Q  274 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag-caaatttttaaaaagtacgtaattcaa 353  Q
    |||||||| ||| |||  |||||||| ||||||||||||| ||||| ||||||  ||| ||||||||| || |||||||||    
T  1363155 caaatttacgaagaataacaatgttccgtaatttgaacatatctcctttagagtaaaaattttaaaaaatatgtaattcaa 1363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 11168835 - 11168915
Alignment:
Q  260 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    ||||||||||||| |||| ||| ||| |||   ||||||| |||||||||||||| |||  |||||| || ||||||||||    
T  11168835 gcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagagaaattttttaaaaa 11168915  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 11682702 - 11682650
Alignment:
Q  157 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatg 209  Q
    ||||||||| | || |||||||||||||||||| |||||||||| || |||||    
T  11682702 catctatatgtgtgttgcagtacattatgtatgaaatgacaatagttattatg 11682650  T

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Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 157 - 295
Target Start/End: Complemental strand, 25350714 - 25350576
Alignment:
Q  157 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 256  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25350714 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25350615  T
Q  257 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 295  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25350614 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 157 - 295
Target Start/End: Complemental strand, 25356408 - 25356270
Alignment:
Q  157 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 256  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25356408 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25356309  T
Q  257 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 295  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25356308 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 33097944 - 33097879
Alignment:
Q  275 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    ||||||| ||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33097944 aaatttacgaagaatgacaatgttccgtaatttgaacatctctcctttagagcaaattttttaaaa 33097879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 350
Target Start/End: Original strand, 25731043 - 25731139
Alignment:
Q  255 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaatt 350  Q
    ||||||| |||||||||| |||||||| ||| | || ||||||   ||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  25731043 attatgcaaccttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatt 25731139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 31299417 - 31299477
Alignment:
Q  275 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 335  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||| ||||| |||||||||    
T  31299417 aaatttatgaagaatgacaatgttccgtaattttaacatctctcctttagaacaaattttt 31299477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 33105296 - 33105358
Alignment:
Q  292 caatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 353  Q
    |||||||| ||||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  33105296 caatgttccgtaatttgaacatctctcttttggagcaaatttttaaaaaaatacgtaattcaa 33105358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 4479019 - 4478967
Alignment:
Q  274 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 326  Q
    |||||||| ||| | | |||||||||||||||||||| |||||||| ||||||    
T  4479019 caaatttacgaagattagcaatgttctgtaatttgaatatctctcctttagag 4478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 351
Target Start/End: Original strand, 21895080 - 21895159
Alignment:
Q  274 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattc 351  Q
    |||||||| ||| ||| | ||||||| ||||||||||||| ||||| |||||| |||  |||||||||| || |||||||    
T  21895080 caaatttacgaagaatagtaatgttccgtaatttgaacatatctcctttagagtaaaattttttaaaaaatatgtaattc 21895159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37222042 - 37222123
Alignment:
Q  1 atgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatcctttccgcagatgtca 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  37222042 atgtttgacaagttataccaggtcagtagtatctcgaactcttgctgataattgtttttgtatatccttttcgcagatgtca 37222123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 352
Target Start/End: Complemental strand, 25123571 - 25123459
Alignment:
Q  243 acaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt---aaaa 339  Q
    |||||| |||||||||||| |||||||||| ||| |||| ||| |||| |||||||| ||||||||||||||||||  || ||||||||||||   ||||    
T  25123571 acaaatgttcggattatgcaaccttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatctctcatttggagcaaatttttttaaaaa 25123472  T
Q  340 agtacgtaattca 352  Q
    | |||||||||||    
T  25123471 aatacgtaattca 25123459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 45003783 - 45003691
Alignment:
Q  262 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttt-taaaaagtacgtaattcaa 353  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||    
T  45003783 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaa 45003691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 15084409 - 15084343
Alignment:
Q  274 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    |||||||| ||| ||| ||||||||| ||||||||||||| ||||| |||||| ||| |||||||||    
T  15084409 caaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagagtaaaattttaaaaa 15084343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 44800576 - 44800628
Alignment:
Q  263 accttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatct 315  Q
    |||||||||| |||||||| ||| ||| ||||||||  |||||||||||||||    
T  44800576 accttcgttctcaaatttacgaagaatagcaatgtttcgtaatttgaacatct 44800628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34230188 - 34230119
Alignment:
Q  1 atgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatccttt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34230188 atgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtacatccttt 34230119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 5482954 - 5483046
Alignment:
Q  262 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 353  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||    
T  5482954 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 5483046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 1694811 - 1694903
Alignment:
Q  262 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaag-tacgtaattcaa 353  Q
    ||||||||||| |||||||| ||| ||| ||||||||| || |||||||||| ||||| ||||||||| ||||| ||||| | ||||||||||    
T  1694811 gaccttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagagcaatttttttaaaagatgcgtaattcaa 1694903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 36678851 - 36678774
Alignment:
Q  261 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    |||||||||||| |||||||| ||||||| |||||||| |||||||| |||||||||   |||||| |||||||||||||    
T  36678851 cgaccttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacatctct--tttagagtaaatttttaaaaa 36678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 1967531 - 1967467
Alignment:
Q  276 aatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    |||||| ||| |||| |||||||| ||||||||||||| ||||  ||| ||||||||||||||||    
T  1967531 aatttacgaagaatgacaatgttccgtaatttgaacatttctcttttaaagcaaatttttaaaaa 1967467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 29693301 - 29693400
Alignment:
Q  255 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 353  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  29693301 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaa 29693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 52037514 - 52037420
Alignment:
Q  260 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 353  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| |||||| ||  |||||||||| ||| ||||||||    
T  52037514 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagaggaatttttttaaaaaatacataattcaa 52037420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 13624230 - 13624309
Alignment:
Q  260 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 340  Q
    ||||||||||||| |||| ||| ||| ||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  13624230 gcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatttgaacatctctcctttagag-aaatttttaaaaa 13624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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