View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_low_12 (Length: 426)

Name: NF12968_low_12
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_low_12
NF12968_low_12
[»] chr1 (3 HSPs)
chr1 (20-399)||(1796645-1797026)
chr1 (278-341)||(3223079-3223143)
chr1 (290-341)||(38010811-38010863)
[»] chr6 (1 HSPs)
chr6 (277-408)||(6889394-6889523)
[»] chr7 (2 HSPs)
chr7 (276-327)||(1774745-1774796)
chr7 (278-341)||(3270607-3270671)
[»] chr8 (2 HSPs)
chr8 (276-341)||(39643612-39643678)
chr8 (275-328)||(14099692-14099745)
[»] chr5 (2 HSPs)
chr5 (359-406)||(3726436-3726483)
chr5 (279-407)||(21045728-21045856)
[»] scaffold0408 (1 HSPs)
scaffold0408 (275-328)||(10034-10087)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 1796645 - 1797026
Alignment:
Q  20 caacacagatttgaaaattttaaatataatatccgatccataaagtaaaaatgttataatcaaattcctaatctaatatatttttgagttgtaacaccag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1796645 caacacagatttgaaaattttaaatataatatccgatccataaaataaaaatgttataatcaaattcctaatctaatatatttttgagttgtaacaccag 1796744  T
Q  120 ttaatatccagcgtataagcccgttattacattgattttacaaaccctaatgtaaaaagtacgtacagtaacactataaaatctgctagctgtacacaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1796745 ttaatatccagcgtataagcccgttattacattgattttacaaaccctaatgtaaaaagtacgtacagtaacactataaaatctgctagctttacacaat 1796844  T
Q  220 tgaccaactttttacatcagttttactactat--aattggtgggaaaaaaggatattcaatgttagagagtgatattagactcaaataaatgatttaact 317  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1796845 tgaccaactttttacatcagttttactactataaaattggtgggaaaaaaggatattcaatgttagagagtgatattagactcaaataaatgatttaact 1796944  T
Q  318 atttagtttagagtaaaattatatatattagttgtatttccttttaattgttgctagttggacctttaatttaagtctttag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1796945 atttagtttagagtaaaattatatatattagttgtatttccttttaattgttgctagttggacctttaatttaagtctttag 1797026  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 3223143 - 3223079
Alignment:
Q  278 tgttagagagtgatattagactcaaataaatgatttaactatttagttt-agagtaaaattatat 341  Q
    ||||||||||| |||||||||| |||| ||| ||||| ||||||||||| |||||||||||||||    
T  3223143 tgttagagagttatattagacttaaatgaataatttagctatttagtttaagagtaaaattatat 3223079  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 38010863 - 38010811
Alignment:
Q  290 atattagactcaaataaatgatttaactatttagtttag-agtaaaattatat 341  Q
    ||||||||||||||||||| ||||| ||||||| ||||| |||| ||||||||    
T  38010863 atattagactcaaataaataatttacctatttaatttagaagtataattatat 38010811  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 408
Target Start/End: Original strand, 6889394 - 6889523
Alignment:
Q  277 atgttagagagtgatattagactcaaataaatgatttaactatttagttta-gagtaaaattatatatattagttgtatttccttttaattgttgctagt 375  Q
    |||||||||||||  | ||||||||||||||| ||||| ||||||||||||  ||||||||||| | || |  |||| |||||||| | |||||| ||||    
T  6889394 atgttagagagtgcaactagactcaaataaataatttagctatttagtttataagtaaaattatgt-tagt--ttgtctttcctttgagttgttgttagt 6889490  T
Q  376 tggacctttaatttaagtctttagtctttaggt 408  Q
    ||||||||||| ||  |||||||||||||||||    
T  6889491 tggacctttaagttgggtctttagtctttaggt 6889523  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 1774796 - 1774745
Alignment:
Q  276 aatgttagagagtgatattagactcaaataaatgatttaactatttagttta 327  Q
    |||||||||||||||||||||||| |||| ||| ||||| ||||||||||||    
T  1774796 aatgttagagagtgatattagactgaaatgaataatttagctatttagttta 1774745  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 3270607 - 3270671
Alignment:
Q  278 tgttagagagtgatattagactcaaataaatgatttaactatttag-tttagagtaaaattatat 341  Q
    ||||||| ||||| |||||||| ||||||||||||||  ||||||| || ||| |||||||||||    
T  3270607 tgttagatagtgaaattagacttaaataaatgatttagatatttagcttaagattaaaattatat 3270671  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 39643678 - 39643612
Alignment:
Q  276 aatgttagagagtgatattagactcaaataaatgatttaactatttagttt-agagtaaaattatat 341  Q
    ||||||||||||||| |||||||| ||||||||||||||  ||| |||||| | |||||||||||||    
T  39643678 aatgttagagagtgaaattagacttaaataaatgatttagatatctagtttaaaagtaaaattatat 39643612  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 14099692 - 14099745
Alignment:
Q  275 caatgttagagagtgatattagactcaaataaatgatttaactatttagtttag 328  Q
    |||||||||||||||  | ||||||||||||||| |||||  ||||||||||||    
T  14099692 caatgttagagagtgcaactagactcaaataaataatttagatatttagtttag 14099745  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 3726483 - 3726436
Alignment:
Q  359 ttttaattgttgctagttggacctttaatttaagtctttagtctttag 406  Q
    ||||||||||| ||||||||| |||||| ||| |||||||||||||||    
T  3726483 ttttaattgtttctagttggatctttaaattaggtctttagtctttag 3726436  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 407
Target Start/End: Original strand, 21045728 - 21045856
Alignment:
Q  279 gttagagagtgatattagactcaaataaatgatttaactatttagttt-agagtaaaattatatatattag-ttgtatttccttttaattgttgctagtt 376  Q
    |||||||||||| |||||||| ||||||||||| |   ||| |||||| ||||||||||||||  |||||| |||| ||||  || | |||||||| |||    
T  21045728 gttagagagtgaaattagacttaaataaatgatgttgatatctagtttaagagtaaaattata-ctattagtttgtctttcgcttgagttgttgctcgtt 21045826  T
Q  377 ggacctttaatttaagtctttagtctttagg 407  Q
    ||||| |||| ||| |||| |||||||||||    
T  21045827 ggacc-ttaagttaggtctgtagtctttagg 21045856  T

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Target: scaffold0408 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 10034 - 10087
Alignment:
Q  275 caatgttagagagtgatattagactcaaataaatgatttaactatttagtttag 328  Q
    |||||||||||||||  | ||||||||||||||| |||||  ||||||||||||    
T  10034 caatgttagagagtgcaactagactcaaataaataatttagatatttagtttag 10087  T

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