View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_14 (Length: 404)
Name: NF12968_low_14
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_14 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 37 - 404
Target Start/End: Complemental strand, 37704859 - 37704492
Alignment:
| Q |
37 |
ccgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaat |
136 |
Q |
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| T |
37704859 |
ccgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaat |
37704760 |
T |
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| Q |
137 |
gttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattcca |
236 |
Q |
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| T |
37704759 |
gttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattcca |
37704660 |
T |
|
| Q |
237 |
actttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
336 |
Q |
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| T |
37704659 |
actttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
37704560 |
T |
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| Q |
337 |
tgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagac |
404 |
Q |
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| T |
37704559 |
tgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagac |
37704492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 78 - 404
Target Start/End: Complemental strand, 37699349 - 37699013
Alignment:
| Q |
78 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac |
171 |
Q |
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| T |
37699349 |
gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa |
37699250 |
T |
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| Q |
172 |
attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g |
267 |
Q |
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| T |
37699249 |
attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg |
37699150 |
T |
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| Q |
268 |
gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga |
367 |
Q |
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|| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
37699149 |
gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga |
37699050 |
T |
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| Q |
368 |
aaagcacccccaaaacaaaataagggaatacgtagac |
404 |
Q |
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||||||||||||| ||||||||||||||||| ||||| |
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| T |
37699049 |
aaagcacccccaacacaaaataagggaatacctagac |
37699013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 138 - 377
Target Start/End: Complemental strand, 37437823 - 37437584
Alignment:
| Q |
138 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
234 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37437823 |
ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37437724 |
T |
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| Q |
235 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
333 |
Q |
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|||||| ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
37437723 |
caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat |
37437628 |
T |
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| Q |
334 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccc |
377 |
Q |
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| T |
37437627 |
tgttgccaattgtcatatcactatacggttatgaaaagcacccc |
37437584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 194 - 321
Target Start/End: Complemental strand, 37698864 - 37698732
Alignment:
| Q |
194 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
288 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
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| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
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| Q |
289 |
tttaatgaacaccaaacttttctatgatggtta |
321 |
Q |
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| T |
37698764 |
tttaacgaacaccaaacttttgtatgattgtta |
37698732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 78 - 314
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
| Q |
78 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa |
167 |
Q |
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||||||||||||||| | | |||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||| |
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| T |
16840857 |
gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa |
16840956 |
T |
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| Q |
168 |
gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa |
261 |
Q |
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||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
16840957 |
gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa |
16841055 |
T |
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| Q |
262 |
agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
314 |
Q |
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||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
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| T |
16841056 |
agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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