View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_15 (Length: 398)
Name: NF12968_low_15
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 4338000 - 4337676
Alignment:
| Q |
16 |
ataattcttcattcttttttgactggaataactcttccttcttagatagcacataatatgacatgtatatgacatgataatgcagttcttcgtttattta |
115 |
Q |
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| T |
4338000 |
ataattcttcattcttttttgactggaataactcttccttcttagagagcacataatatgacatgtatatgacatgataatgcagttcttcgtttattta |
4337901 |
T |
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| Q |
116 |
ctcgatgcaaatactgctgtttcccacattgcagagttcatagataaaatgagaaaatgctaatcataatatatattcgtaactgttcaaaataacctgc |
215 |
Q |
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| T |
4337900 |
ctcgatgcaaatactgctgtttcccacattgcagagttcatagataaaatgagaaaatgctaatcata----atattcgtaactgttcaaaataacctgc |
4337805 |
T |
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| Q |
216 |
ccaaacatcatagtttatacttaaaattattagaaaaaactcaccataccatccttttatgagtaccaccatgtttccaaattgaatgtttaaacagttt |
315 |
Q |
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| T |
4337804 |
ccaaacatcatagtttatacttaaaattattagaaaaaactcaccataccatccttttatgagtaccaccatgtttccaaattgaatgtttaaacagttt |
4337705 |
T |
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| Q |
316 |
taaagcaataactaaacaattagataact |
344 |
Q |
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| T |
4337704 |
taaagcaataactaaacaattagataact |
4337676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 4122035 - 4122110
Alignment:
| Q |
291 |
tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactgacaaatacattttttatgagg |
366 |
Q |
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| T |
4122035 |
tccaaattgaatgttaaaacatttttaaagcagtaattaaaaaattagataactaaaaaatacatattttgtgagg |
4122110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 4131771 - 4131835
Alignment:
| Q |
291 |
tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactgacaaatacatttt |
358 |
Q |
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| T |
4131771 |
tccaaattgaatgtttaat---tttaaaagcaataattaaacagtgagataactaacaaatacatttt |
4131835 |
T |
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