View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_23 (Length: 339)
Name: NF12968_low_23
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 43869781 - 43869463
Alignment:
| Q |
1 |
caccatagcttatgcaaaatcacattgggtcaccatgannnnnnnggtataccaccatgatataaaacatgcacgaagaatggttacaagttaattatga |
100 |
Q |
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| T |
43869781 |
caccatagcttatgcaaaatcacattgggtcaccgtgatttt---ggtataccaccatgatataaaacatgcacgaagaatggttacaagttaattatta |
43869685 |
T |
|
| Q |
101 |
ttaataagtagcttagttaaaaggaccacgtctagttgaagagtatacactcgttgcaatcaagtatttcaacattacaacaattaataaccatttcaat |
200 |
Q |
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| T |
43869684 |
ttaataagtagcttagttaaaaaaaccacgtctagttgaagagtatacactcgttgcaatcaagtatttcaacattacaacaattaataaccatttcaat |
43869585 |
T |
|
| Q |
201 |
ctaatgttaaatagcatagcatcaacatttgaatgtgaacttctagtaaggaacaataataataggcttacaaaaaccaacagccaaatcatcaactagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43869584 |
ctaatgttaaatagcatagcatcaacatttgaatgtgaacttctagtaaggaacaataataataggcttacaaaaaccaacagccaaatcatcaactagc |
43869485 |
T |
|
| Q |
301 |
tcataattgaagcgttaccatt |
322 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
43869484 |
tcataattgaagggttaccatt |
43869463 |
T |
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