View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_24 (Length: 337)
Name: NF12968_low_24
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 92 - 321
Target Start/End: Complemental strand, 35161733 - 35161504
Alignment:
| Q |
92 |
aaatctactttgttgtataccatgtcaggatgaaatggaacgattaaatcagaaaattatgagccgaaccaagggtacaattactaacacttccaagttc |
191 |
Q |
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| T |
35161733 |
aaatctactttgttgaataccatgtcaggatgaaatggaacgattaaatcagaaaattatgagccgaaccaagggtacaattactaacgcttccaagttc |
35161634 |
T |
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| Q |
192 |
caaatcaagttatagcataacatccaaaaaccacagtataaccattaatcaaacactgtttaaacaccaagagcaacaactagaacaatcgcacaaccga |
291 |
Q |
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| T |
35161633 |
caaatcaagttatagcataacatccaaaaaccacagtataaccattaatcaaacactgtttaaacaccaagagcaacaactagaacaatcgcacaaccga |
35161534 |
T |
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| Q |
292 |
aaaaaggcattattgcgacacaattataat |
321 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35161533 |
aaaaaggcattattgcgacacaattataat |
35161504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35161803 - 35161759
Alignment:
| Q |
16 |
atctagaatatggatagttattcctgccttttatgtgttattcat |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35161803 |
atctagaatatggatagttattcctgccttttatgtgttattcat |
35161759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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