View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_low_25 (Length: 335)

Name: NF12968_low_25
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_low_25
NF12968_low_25
[»] chr7 (5 HSPs)
chr7 (22-197)||(7655026-7655201)
chr7 (74-215)||(38603031-38603172)
chr7 (171-215)||(30969776-30969820)
chr7 (178-215)||(7754218-7754255)
chr7 (171-215)||(19267367-19267411)
[»] chr5 (1 HSPs)
chr5 (73-215)||(18345722-18345864)
[»] chr4 (2 HSPs)
chr4 (77-147)||(9521817-9521886)
chr4 (171-215)||(23499436-23499480)
[»] chr3 (1 HSPs)
chr3 (177-215)||(41417170-41417208)
[»] chr6 (1 HSPs)
chr6 (150-215)||(14536142-14536207)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 7655026 - 7655201
Alignment:
Q  22 ctatttacaattttgttttccaccataaacatttacttattacctatgttccggatccggttcctctaaactaaacaattcactttagagtgtaaaatga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655026 ctatttacaattttgttttccaccataaacatttacttattacctatgttccggatccggttcctctaaactaaacaattcactttagagtgtaaaatga 7655125  T
Q  122 gtagtatcaaaccattaagtaacaaactaaggaagatatcgtaggcaagtcatgacaaatcacgagtttgttacaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655126 gtagtatcaaaccattaagtaacaaactaaggaagatatcgtaggcaagtcatgacaaatcacgagtttgttacaa 7655201  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 38603172 - 38603031
Alignment:
Q  74 ggatccggttcctctaaactaaacaattcactttagagtgtaaaatgagtagtatcaaaccattaagtaacaaa-ctaaggaagatatcgtaggcaagtc 172  Q
    |||||||| |||| |||| | | ||| ||||||||||||||||| ||| || |||||| || |||| ||| ||| | |||| |||||| ||||| |  |     
T  38603172 ggatccggctcctttaaaatgagcaactcactttagagtgtaaagtgaataatatcaa-ccgttaattaaaaaatcaaaggtagatattgtaggtacatt 38603074  T
Q  173 atgacaaatcacgagtttgttacaataacaaccctttattttc 215  Q
    || |||||||| |||||||||| ||||||||||||| ||||||    
T  38603073 ataacaaatcatgagtttgttaaaataacaacccttgattttc 38603031  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 30969820 - 30969776
Alignment:
Q  171 tcatgacaaatcacgagtttgttacaataacaaccctttattttc 215  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||    
T  30969820 tcataacaaatcatgagtttgttacaataacaacccttgattttc 30969776  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 7754218 - 7754255
Alignment:
Q  178 aaatcacgagtttgttacaataacaaccctttattttc 215  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  7754218 aaatcacgagtgtgttacaataacaacccttgattttc 7754255  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 19267367 - 19267411
Alignment:
Q  171 tcatgacaaatcacgagtttgttacaataacaaccctttattttc 215  Q
    |||| |||||||| |||||||||| ||||||||||||| ||||||    
T  19267367 tcataacaaatcatgagtttgttaaaataacaacccttgattttc 19267411  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 18345864 - 18345722
Alignment:
Q  73 cggatccggttcctctaaactaaacaattcactttagagtgtaaaatgagtagtatcaaaccattaagtaacaaactaag-gaagatatcgtaggcaagt 171  Q
    ||||||||| ||||||||| | | ||||||||||||||||||||| || | | |||||| || |||| ||| |||  ||  | | |||| ||||| | ||    
T  18345864 cggatccggctcctctaaagtgagcaattcactttagagtgtaaagtgggcaatatcaa-ccgttaattaataaatgaaaagtatatattgtaggtacgt 18345766  T
Q  172 catgacaaatcacgagtttgttacaataacaaccctttattttc 215  Q
    ||| |||||||| ||||||||| |||||||||||||| ||||||    
T  18345765 cataacaaatcatgagtttgttgcaataacaacccttgattttc 18345722  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 9521817 - 9521886
Alignment:
Q  77 tccggttcctctaaactaaacaattcactttagagtgtaaaatgagtagtatcaaaccattaagtaacaaa 147  Q
    ||||| ||||||||| | || |||||||||||||||||||| |||||| |||| ||||||||| |||||||    
T  9521817 tccggctcctctaaagtgaataattcactttagagtgtaaagtgagtaatatc-aaccattaattaacaaa 9521886  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 23499436 - 23499480
Alignment:
Q  171 tcatgacaaatcacgagtttgttacaataacaaccctttattttc 215  Q
    |||| |||||||| |||||||||| ||||||||||||| ||||||    
T  23499436 tcataacaaatcatgagtttgttaaaataacaacccttaattttc 23499480  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 41417208 - 41417170
Alignment:
Q  177 caaatcacgagtttgttacaataacaaccctttattttc 215  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  41417208 caaatcacgagtttgttacaataacaacccttgattttc 41417170  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 14536207 - 14536142
Alignment:
Q  150 aaggaagatatcgtaggcaagtcatgacaaatcacgagtttgttacaataacaaccctttattttc 215  Q
    |||| |||||| ||||| |  |||| |||||||||||||||||| ||||||||||| || ||||||    
T  14536207 aaggtagatattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttc 14536142  T

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