View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_26 (Length: 334)
Name: NF12968_low_26
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 189 - 316
Target Start/End: Original strand, 2989604 - 2989731
Alignment:
| Q |
189 |
ctgacatgttaacaccattgatccctaaatccccaacattcaaacaacaaaagaaaacccatttttctcttgccctcaatgaagccaaacatatttcaaa |
288 |
Q |
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| T |
2989604 |
ctgacatgttaacaccattgatccctaaatccccaacattcaaacaacaaaagaaaacccatttttctcttgccctcaatgaagccaaacatatttcaaa |
2989703 |
T |
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| Q |
289 |
catagcattacctatggttttaacaggt |
316 |
Q |
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| T |
2989704 |
catagcattacctatggttttaacaggt |
2989731 |
T |
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Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 2989435 - 2989538
Alignment:
| Q |
20 |
gaacacaaaactccttcctctgtctcttgttgtgtcttatatgctgttcacaccatgtgcaagttatcatcatcatcaacctctgtctccactttgtatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2989435 |
gaacacaaaactccttcctctgtctcttgttgtgtcttatatgctgttcacaccatgtgcaagttatcatcatcatcaacctctgtctccactttgtatg |
2989534 |
T |
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| Q |
120 |
aaag |
123 |
Q |
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|||| |
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| T |
2989535 |
aaag |
2989538 |
T |
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