View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_3 (Length: 822)
Name: NF12968_low_3
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 717; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 16 - 797
Target Start/End: Complemental strand, 9372769 - 9371996
Alignment:
| Q |
16 |
gaacatgccagccaatagatacctctggatcgaaaacaacacctttattttagcattagaaaaaagtgactaatgtacaatgtttggcataaaaatgaca |
115 |
Q |
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| T |
9372769 |
gaacatgccagccaatagatacctctggatcgaaaacaacacctttattttagcattagaaaaaagtgactaatgtacaatgtttggcataaaaatgaca |
9372670 |
T |
|
| Q |
116 |
aatttaccaagttctaaggacaactcacgtgctacattattttgttgaaggaagcatgaattgctttctattatatatagagagacaaagaagatgaaaa |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9372669 |
aatttaccaagttctaaggaaaactcacgtgctacattattttgttgaatgaagcatgaattgctttctattatatatagagagacaaagaagatgaaaa |
9372570 |
T |
|
| Q |
216 |
agaattgcaggaagttgatccattttgaaatgaagatcatgagctcacttcattgataacagtgcttagtctgcttcagagtcaaagtcagccaaatggt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9372569 |
agaattgcaggaagttgatccattttgaaatgaagatcatgagctcacttcattgataacagtgcttagtctgcttcagagtcaaagtcaaccaaatggt |
9372470 |
T |
|
| Q |
316 |
taaggatggcaaaactaattcataagaggataacttcatgtgaagagaacttggagaatttcaacaagtttctgaatgtgaaagcatatttaagcaccct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9372469 |
taaggatggcaaaactaattcataagaggataacttcatgtgaagagaacttggagaatttcaacaagtttctgaatgtgaaagcatatttaagcaccct |
9372370 |
T |
|
| Q |
416 |
tttaagtactcatgtttgtaaagagaactggtaaaatttcatgaacttggcgctccaagcctccaacaatcttctgtcaagtgttagtctcgtctacatc |
515 |
Q |
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| T |
9372369 |
tttaagtactcatgtttgtaaagagaactggtaaaatttcatgaacttggcgct--------ccaacaatcttctgtcaagtgttagtctcgtccacatc |
9372278 |
T |
|
| Q |
516 |
gggcctcttcgagagatacttaagtgttttcatcgagccattctaagaccaaagaagctctctctcctactggaagcttttgttcgaacaattgaacttg |
615 |
Q |
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| T |
9372277 |
gggcctcttcgagagatacttaagtgttttcatcgagccattctaagaccaaagaagctctctctcctactggaagcttttgttcgaacaattgaacttg |
9372178 |
T |
|
| Q |
616 |
tactgccattggcatacatacatcaacatgacaccttaattagtttgctggattcctgggtaatcaaagagggttgcatgcatgtggaagcgagtaacaa |
715 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9372177 |
taccgtcattggcatacatacatcaacatgacaccttaattagtttgctggattcctgagtaatcaaagagggttgcatgcatgtggaagcgagtaacaa |
9372078 |
T |
|
| Q |
716 |
gatataaaattcttatgaaagccaaaagtttctaacttcctatatttcttggcaataaataacaaagaaaagttaatattat |
797 |
Q |
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| T |
9372077 |
gatataatattcttatgaaagccaaaagtttctaacttcctatatttcttggcaataaataacaaagaaaagtaaatattat |
9371996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 288 - 555
Target Start/End: Complemental strand, 9366393 - 9366119
Alignment:
| Q |
288 |
gcttcagagtcaaagtcagccaaatggttaaggatggcaaaactaattcataagaggataacttcatgtgaagagaacttggagaatttcaacaagtttc |
387 |
Q |
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|||||||||| ||| ||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9366393 |
gcttcagagtaaaattcaaccaaatggttatggatggcaaaattaatgcataagaggataacttcatgtgaagagaacttggagaatttcaataagtttc |
9366294 |
T |
|
| Q |
388 |
tgaatgtgaaagcatatttaagcacccttttaagtac--------tcatgttt-------gtaaagagaactggtaaaatttcatgaacttggcgctcca |
472 |
Q |
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| T |
9366293 |
tgaatgtgaaatcatatttaagcacccttttgagaactggtgaaatcatatttaagcacccttttgagaactggtaaaatttcatgaacttgttg----- |
9366199 |
T |
|
| Q |
473 |
agcctccaacaatcttctgtcaagtgttagtctcgtctacatcgggcctcttcgagagatacttaagtgttttcatcgagcca |
555 |
Q |
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| T |
9366198 |
---ctccaacaatcttctgtcaagtgttagtatcatccacatcaggcctcttcgagagatacttacgtgttttcatcgagcca |
9366119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 586 - 721
Target Start/End: Complemental strand, 9366109 - 9365974
Alignment:
| Q |
586 |
tggaagcttttgttcgaacaattgaacttgtactgccattggcatacatacatcaacatgacaccttaattagtttgctggattcctgggtaatcaaaga |
685 |
Q |
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|||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9366109 |
tggaagctttcatccgaacaattgaacttgtaccgccatcggcatacatacatcaacatgacaccttaattagtttgctggattcctgagtaatcaaaga |
9366010 |
T |
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| Q |
686 |
gggttgcatgcatgtggaagcgagtaacaagatata |
721 |
Q |
| |
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|| ||||||||||||||||||||||||| ||||||| |
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| T |
9366009 |
ggtttgcatgcatgtggaagcgagtaactagatata |
9365974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 9366500 - 9366449
Alignment:
| Q |
233 |
atccattttgaaatgaagatcatgagctcacttcattgataacagtgcttag |
284 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9366500 |
atccattttgaaatgaagatcatgagcttacttcattgataacagtgcttag |
9366449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 9366682 - 9366538
Alignment:
| Q |
94 |
aatgtttggcataaaaatgacaaatttaccaagttctaaggacaactcacgtgctacatta-ttttgttgaaggaagcatgaattgctttctattatata |
192 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||| || ||||| ||||| ||||| |||||| ||| ||||||||| |||||| || |||||| |
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| T |
9366682 |
aatgtttggcataaacgtgacaagtttaccaagttctatgggaaactcgtgtgctgcattatttttgtcgaatgaagcatgagttgcttgctgctatata |
9366583 |
T |
|
| Q |
193 |
t--agagagacaaagaagatgaaaaagaattgcaggaagttgatc |
235 |
Q |
| |
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| |||| | ||||||||||||| |||||||| ||||||| |||| |
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| T |
9366582 |
ttgagagtgtcaaagaagatgaagaagaattgtaggaagtagatc |
9366538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 9335617 - 9335476
Alignment:
| Q |
286 |
ctgcttcagagtcaaagtcagccaaatggttaaggat---gg--caaaactaattcata--agaggataacttcatgtgaagagaacttggagaatttca |
378 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| | || ||||||| || |||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
9335617 |
ctgcttcaaagtcaaagtcaaccaaatggttaaggttaagggttcaaaactgatgcatataagaggataatatcatgtgaaaagaacttggagaatttca |
9335518 |
T |
|
| Q |
379 |
acaagtttctgaatgtgaaagcatatttaagcacccttttaagt |
422 |
Q |
| |
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|| |||| | | |||||||||| |||||||| |||| ||||| |
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| T |
9335517 |
acgagttac--actgtgaaagcacctttaagcatccttctaagt |
9335476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 9289537 - 9289566
Alignment:
| Q |
166 |
gaagcatgaattgctttctattatatatag |
195 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
9289537 |
gaagcatgaattgctttctattatatatag |
9289566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 9366856 - 9366815
Alignment:
| Q |
16 |
gaacatgccagccaatagatacctctggatcgaaaacaacac |
57 |
Q |
| |
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|||||||||||| |||||||||||||| || ||||||||||| |
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| T |
9366856 |
gaacatgccagcaaatagatacctctgaattgaaaacaacac |
9366815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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