View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_34 (Length: 266)
Name: NF12968_low_34
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 38209205 - 38208954
Alignment:
| Q |
1 |
accaaatcacctctttcagatggaaatttagctttaatgcggactccaaaaatcaaaacagtgccatttccaaaatcttgcaagagataggattccatca |
100 |
Q |
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| T |
38209205 |
accaaatcacctctttcagatggaaatttagctttaatgcggactccaaaaatcaaaacagtgccatttccaaaatcttgcaagagataggattccatca |
38209106 |
T |
|
| Q |
101 |
ctaccaaatttgaacagatatttaattaataa---taatcatagatgatagtaatatctgttggggggagaaaagtatttataaactttgatgataagtt |
197 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
38209105 |
ctgccaaatttgaacagatatttaattaataataataatcatagatgatagtaatatctgttaggggaagaaaagtatttataaactttgatgataagtc |
38209006 |
T |
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| Q |
198 |
agatcattgatattttttaggtctaatgcatctaaa-atcctttaagttttt |
248 |
Q |
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|||||||||||||||||||| || ||||||| |||| ||||||||| ||||| |
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| T |
38209005 |
agatcattgatattttttagatcaaatgcatttaaagatcctttaaattttt |
38208954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 39699856 - 39699897
Alignment:
| Q |
208 |
tattttttaggtctaatgcatctaaaatcctttaagtttttc |
249 |
Q |
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| T |
39699856 |
tatttattaggtcaaatgcatctaaaatcatttaagtttttc |
39699897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 31208983 - 31208943
Alignment:
| Q |
211 |
tttttaggtctaatgcatctaaaatcctttaagtttttcat |
251 |
Q |
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| T |
31208983 |
tttttaggtcaaatgcatctaaggtcctttaagtttttcat |
31208943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 43968156 - 43968200
Alignment:
| Q |
207 |
atattttttaggtctaatgcatctaaaatcctttaagtttttcat |
251 |
Q |
| |
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| T |
43968156 |
atattttttaggtcaaatgcatctaaaggtctttaagtttttcat |
43968200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 14717845 - 14717805
Alignment:
| Q |
212 |
ttttaggtctaatgcatctaaaa-tcctttaagtttttcat |
251 |
Q |
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| T |
14717845 |
ttttaggtcaaatgcatctaaaagtcctttaagtttttcat |
14717805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 11949328 - 11949368
Alignment:
| Q |
212 |
ttttaggtctaatgcatctaaaa-tcctttaagtttttcat |
251 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
11949328 |
ttttaggtcaaatgcatctaaaagtcctttaagtttttcat |
11949368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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