View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_35 (Length: 262)
Name: NF12968_low_35
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 5554518 - 5554282
Alignment:
| Q |
17 |
agctatatcagcttttcaagttagtgttggacaagcaggtacctcaaaccgaacggttaaacttccgaagaatttcactcttttggctcctggacctggt |
116 |
Q |
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| T |
5554518 |
agctatatcagcttttcaagttagtgttggacaagcaggtacctcaaaccgaacggttaaacttccgaagaatttcactcttttggctcctggacctggt |
5554419 |
T |
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| Q |
117 |
tacacttgtggccctgcaaaggttgttccttccaccaatttccttacacctgataggcgccgaaagacacaagcattgagtaagtttctctaactagaca |
216 |
Q |
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| T |
5554418 |
tacacttgtggccctgcaaaggttgttccttccaccaatttccttacacctgataggcgccgaaagacacaagcattgagtaagtttctctaactagaca |
5554319 |
T |
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| Q |
217 |
atctcaatttcttcactgtttttcacatgatgatgtc |
253 |
Q |
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| T |
5554318 |
atctcaatttcttcactgtttttcacataatgttgtc |
5554282 |
T |
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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 5012359 - 5012181
Alignment:
| Q |
24 |
tcagcttttcaagttagtgttggacaagcaggtacctcaaaccgaacggttaaacttccgaagaatttcactcttttggctcctggacctggttacactt |
123 |
Q |
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|||||||| |||||||||||||||||||| ||||| |||||| || || ||||| || ||||| |||||||| ||||||||||||||||| || |||| |
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| T |
5012359 |
tcagctttccaagttagtgttggacaagctggtacttcaaacaagactgtgaaactccctaagaacttcactctcttggctcctggacctggctatactt |
5012260 |
T |
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| Q |
124 |
gtggccctgcaaaggttgttccttccaccaatttccttacacctgataggcgccgaaagacacaagcattgagtaagtt |
202 |
Q |
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| T |
5012259 |
gtggtcctgctaagattgttccttccaccactttcctcaccacggataagcgtcgcaagactcaagcacttagtaagtt |
5012181 |
T |
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