View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_38 (Length: 251)
Name: NF12968_low_38
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 40899468 - 40899618
Alignment:
| Q |
1 |
cgcacaaatttgaattgaactaatcatcatgatagaacattattattaataaattaagcacgcaagtgaaaacaatcagagagaacaatgataatacctc |
100 |
Q |
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| T |
40899468 |
cgcacaaatttgaattgaactaatcatcatgatagaacattattattaataaattaagcacgcaagtgaaaacaatcagagagaacaatgataatacctc |
40899567 |
T |
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| Q |
101 |
tgatgatctctttgattttccctttcatcgccgtcagagtacgattcgcca |
151 |
Q |
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| T |
40899568 |
tgatgatctctttgattttccctttcatcgccgtcagagtactattcgcca |
40899618 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 44154758 - 44154847
Alignment:
| Q |
13 |
aattgaactaatcatcatgatagaa----cattattattaataaattaagcacgcaagtgaaaacaatcagagagaacaatgataatacc |
98 |
Q |
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| T |
44154758 |
aattgaactaatcgtcatgatagaaagaacattattattaataaattaagcacgcaaacgaaatcaatcagagagaacaatgatgatacc |
44154847 |
T |
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