View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_39 (Length: 251)
Name: NF12968_low_39
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_39 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 43870044 - 43869804
Alignment:
| Q |
13 |
aatatcgatccctggttcattctttgaaaattcagttgaattttatnnnnnnnnnngtgattattttacaaggctagtaaatttatcagtacgtagaaca |
112 |
Q |
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| T |
43870044 |
aatatcgatccctggttcattctttgaaaattcagttgaattttataaaaaaaa--gtgattattttacaaggctagtaaatttatcagtacgtagaaca |
43869947 |
T |
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| Q |
113 |
caaacttaccaggaaa----aatatgttcaaactttaaaacatgtcaaaaatagcattttctggaatattagctttttctacccattgttataattagtt |
208 |
Q |
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| T |
43869946 |
caaacttaccaggaaattaaaatatgttcaaactttaaaacatgtcaaaaatagcattttctataatggtagctttttctacccattgttataattagtt |
43869847 |
T |
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| Q |
209 |
gaataccgtttaaccttatctttggtatcacacacagtgaaga |
251 |
Q |
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| T |
43869846 |
gaataccgtttaaccttatctttggtatcacacacagtgaaga |
43869804 |
T |
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