View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_4 (Length: 793)
Name: NF12968_low_4
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 121 - 501
Target Start/End: Original strand, 19285221 - 19285604
Alignment:
| Q |
121 |
gtctaacttgcataacctaaggccgttatgactagcttgatcaagctttgggcggtcaacattgatgaaatatttatttaaaaattatatcactattaaa |
220 |
Q |
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| T |
19285221 |
gtctaacttgcataacctaaggccgttatgactagcttgatcaagctttggacggtcaacattgatgaaatatttatttaaaaattctaacactattaaa |
19285320 |
T |
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| Q |
221 |
tgcaagaatttaacagnnnnnnntaatattattctctccatcttaaaatgaatgacccaattgatcgattcacataaatcaagaaaatagtataaatgaa |
320 |
Q |
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| T |
19285321 |
tgcaagaatttatcagaaa-----aaaaatattctctccatcttaaaatgaatgatccaattgatcgattcacataaatcaagaaaatagtataaatgaa |
19285415 |
T |
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| Q |
321 |
attgaaagaatagtattcttattaaagtatatttaaaaacccttcctttcccattcccttaaccaaattataag--------tagctagctagtgcaacc |
412 |
Q |
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| T |
19285416 |
attgaaagaatagtattcttattaaagtatatttaaaaacccttcctttcccatttccttaaccaaattataagtatatatctagctagctagtgcaacc |
19285515 |
T |
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| Q |
413 |
tccaaattgattcacgaatggaaatagattgacatgctctggaagatgattattttattcgaaatgatgatggatctatcttattagtt |
501 |
Q |
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| T |
19285516 |
tccaaattgattcacgaatggaaatagattgacatgctctggaagatgattattttattcgaaatgatgatggatctatcttattagtt |
19285604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 499 - 767
Target Start/End: Original strand, 19285632 - 19285900
Alignment:
| Q |
499 |
gttgataatatatttgtattggttatatggttttattagtatggcgctggagatttgcatactacttttgatttagatgaatcaattactagcaacaagg |
598 |
Q |
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| T |
19285632 |
gttgataatatatttgtattggttatatggttttattagtttggctctggagatttgcatactactttttatttagatgaatcaattactagcaacaagg |
19285731 |
T |
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| Q |
599 |
aataaattattagtaaggattgcaatatttatgggtcattttcggcgtgctttgtatattaaccgtccaatcttgatgagattgtagatttaatttgtag |
698 |
Q |
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| T |
19285732 |
aataaattattagtaaggattgcaatatttatgggtcattttcggcgtgctttgtatattaaccgtccaatcttgatgagattgtagatttaatttgtag |
19285831 |
T |
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| Q |
699 |
ggtacaatttgtttaatgcacaagtttctttagattaggtatattaattaatttatagcaatataatgc |
767 |
Q |
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| T |
19285832 |
ggtacaatttgtttaatgcacaagtttcttaagattaggtatattaattaatttatagcaatataatgc |
19285900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 19285116 - 19285175
Alignment:
| Q |
10 |
tcgaagaatataatgtttgaggtaaaattc-tcccccgacacgtcttgtaagctgctcaa |
68 |
Q |
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| T |
19285116 |
tcgaaaaatataatgtttgaggtgaaattcttcccccaacacgttttgtgagctgctcaa |
19285175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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