View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_40 (Length: 246)
Name: NF12968_low_40
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 34935800 - 34936008
Alignment:
| Q |
20 |
ttctgcttacgaacatcggccttatatgcagcctcacaagaattgattaagtccagcatttccatctgcaggtttggaggttaattaataatattaaaga |
119 |
Q |
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| T |
34935800 |
ttctgcttacgaacatcggccttatatgcagcctcacaagaattgattaagtccagcatttccatctgcaggtttggaggttaattaataatattaaagg |
34935899 |
T |
|
| Q |
120 |
actgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaagacaaaacttacatgggattgtaattcagacttag |
219 |
Q |
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| T |
34935900 |
actgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcagacttag |
34935999 |
T |
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| Q |
220 |
tcctggcat |
228 |
Q |
| |
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||||||||| |
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| T |
34936000 |
tcctggcat |
34936008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 34925844 - 34926052
Alignment:
| Q |
20 |
ttctgcttacgaacatcggccttatatgcagcctcacaagaattgattaagtccagcatttccatctgcaggtttggaggttaattaataatattaaaga |
119 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925844 |
ttctgcttacgaacatcagccttatatgcagcctcacaagaattgattaagtccagcatttccatctgcaggtttggaggttaattaataatattaaagg |
34925943 |
T |
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| Q |
120 |
actgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaagacaaaacttacatgggattgtaattcagacttag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
34925944 |
actgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcagacttag |
34926043 |
T |
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| Q |
220 |
tcctggcat |
228 |
Q |
| |
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||||||||| |
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| T |
34926044 |
tcctggcat |
34926052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 34930284 - 34930492
Alignment:
| Q |
20 |
ttctgcttacgaacatcggccttatatgcagcctcacaagaattgattaagtccagcatttccatctgcaggtttggaggttaattaataatattaaaga |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34930284 |
ttctgcttacgaacatcagccttatatgaagcctcacaagaattgattaagtccagcatttccatctgcaggtttggaggttaattaataatattaaagg |
34930383 |
T |
|
| Q |
120 |
actgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaagacaaaacttacatgggattgtaattcagacttag |
219 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
34930384 |
actgaaactaaaattatgaaacttgaacgaaaagcattcatttgttggcttggcatttcgagaaaaacagaacttacatgggattgtaattcagacttag |
34930483 |
T |
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| Q |
220 |
tcctggcat |
228 |
Q |
| |
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||||||||| |
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| T |
34930484 |
tcctggcat |
34930492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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