View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_41 (Length: 245)
Name: NF12968_low_41
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 45448594 - 45448809
Alignment:
| Q |
15 |
caaagggtcaagaagcaagactcaagcaaattaatgatcaattgggctggtatgctcccagttttgattccatggagtagttaatgtttctattttatgt |
114 |
Q |
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| T |
45448594 |
caaagggtcaagaagcaagactcaagcaaattaatgatcaattgggctggtatgctcccagttttgattccatggagtagttaatgtttctattttatgt |
45448693 |
T |
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| Q |
115 |
tgctttaattctttggtttgtgtatagctgaatgcctttattattacattcttccttgttatatacaatttcatggcctttattgttttgcggctaagct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45448694 |
tgctttaattctttggtttgtgtatagctgaatgcctttattattacattcttccttattatatacaatttcatggcctttgttgttttgcggctaagct |
45448793 |
T |
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| Q |
215 |
taatgcttgttattat |
230 |
Q |
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|||||||||||||||| |
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| T |
45448794 |
taatgcttgttattat |
45448809 |
T |
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