View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_42 (Length: 243)
Name: NF12968_low_42
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35161791 - 35162011
Alignment:
| Q |
1 |
ccatattctagatttt-ttccactgaattggacttaccatgcttctccaaaagagtaagtaggatttttgaagttacaactgtgtttatctagaagtgaa |
99 |
Q |
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| T |
35161791 |
ccatattctagatttttttccactgaattggacttaccatgcttctccaaaagagtaagtaggatttttgaagttacaactgtgtttatctagaagtgaa |
35161890 |
T |
|
| Q |
100 |
atgtgattatattaatatcgttgtttcttttaacatacaactattcgacaaaaatgattttagagtagcaagtatcaacttctatgaaaacaattgacaa |
199 |
Q |
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| T |
35161891 |
atgtgattatattaatatcgttgtttcttttaacatacaactattcgacaaaaatgattttagagtagcaagtatcaacttctatgaaaacaattgacaa |
35161990 |
T |
|
| Q |
200 |
tgcaacttttcacacatgaag |
220 |
Q |
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|||||||||||||||| |||| |
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| T |
35161991 |
tgcaacttttcacacaggaag |
35162011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 35154833 - 35154985
Alignment:
| Q |
41 |
cttctccaaaagagtaagtaggatttttgaagttacaact--gtgtttatctagaagtgaaatgtgatta-tattaatatcgttgtttcttttaacatac |
137 |
Q |
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| T |
35154833 |
cttctccaaaagaattggtaggatttt-gaagttacaactttgtgtttatctcaaagggaaagaaaattagtattaatattgttgtctcttttagcatac |
35154931 |
T |
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| Q |
138 |
aactattcgacaaaaatgattttagagtagcaagtatcaacttctatgaaaacaat |
193 |
Q |
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| T |
35154932 |
aa--attcgacggaaatgattttagagtagcaagtatcaacttctatgaaaacaat |
35154985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 28286878 - 28286833
Alignment:
| Q |
151 |
aaatgattttagagtagcaagtatcaacttctatgaaaacaattga |
196 |
Q |
| |
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| T |
28286878 |
aaataattttagagcatcaagtatcaacttctatgaaaataattga |
28286833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 9676388 - 9676270
Alignment:
| Q |
79 |
ctgtgtttatctagaagtgaaatgtgatta-tattaatatcgttgtttcttttaacatacaactattcgacaaaaatgattttagagtagcaagtatcaa |
177 |
Q |
| |
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||||||||||||||||| |||| |||||| |||||||| | |||| | ||||| |||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
9676388 |
ctgtgtttatctagaagggaaaagtgatttgtattaatacccttgtctattttagcatacaactattcgaccaaaatgattctagagtagcaagtatcaa |
9676289 |
T |
|
| Q |
178 |
cttctatgaaaacaattga |
196 |
Q |
| |
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| T |
9676288 |
tttctatgtaaacaattga |
9676270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 31853424 - 31853340
Alignment:
| Q |
109 |
tattaatatcgttgtttcttttaacatacaactattcgacaaaaatgattttagagtagcaagtatcaacttctatgaaaacaat |
193 |
Q |
| |
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||||||||||| ||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
31853424 |
tattaatatcggtgtctcttttagcatacaactatttgactaaaatgattttagagtagcaagtatcagcttaaatgaaaacaat |
31853340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 47397899 - 47397853
Alignment:
| Q |
153 |
atgattttagagtagcaagtatcaacttctatgaaaacaattgacaa |
199 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
47397899 |
atgattttagaacagcaagtatcaacttctatgaaaataattgacaa |
47397853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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