View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_low_48 (Length: 228)

Name: NF12968_low_48
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_low_48
NF12968_low_48
[»] scaffold0130 (1 HSPs)
scaffold0130 (18-69)||(18292-18343)
[»] chr8 (1 HSPs)
chr8 (18-69)||(36284057-36284108)
[»] chr5 (1 HSPs)
chr5 (18-69)||(40571743-40571794)
[»] chr1 (1 HSPs)
chr1 (18-69)||(19913249-19913300)


Alignment Details
Target: scaffold0130 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 18292 - 18343
Alignment:
Q  18 caaacaattgttgagcaatttattaaaactattaatagaggcttatagattt 69  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  18292 caaacaattgttgagcaattcattaaaactagtaatagaggcttatagattt 18343  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 36284057 - 36284108
Alignment:
Q  18 caaacaattgttgagcaatttattaaaactattaatagaggcttatagattt 69  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  36284057 caaacaattgttgagaaatttattaaaactatgaatagaggcttatagattt 36284108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 40571743 - 40571794
Alignment:
Q  18 caaacaattgttgagcaatttattaaaactattaatagaggcttatagattt 69  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  40571743 caaacaattattgagaaatttattaaaactattaatagaggcttatagattt 40571794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 19913249 - 19913300
Alignment:
Q  18 caaacaattgttgagcaatttattaaaactattaatagaggcttatagattt 69  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  19913249 caaacaattattgagaaatttattaaaactattaatagaggcttatagattt 19913300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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