View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12968_low_49 (Length: 227)
Name: NF12968_low_49
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_49 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 2125018 - 2125240
Alignment:
| Q |
7 |
agtaacaccttcgacaaaaacacattgattcggtgagataagattgcacgtaaccttagcaaaccaagccacta--acaccttcaccgccaacattatat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2125018 |
agtaacaccttcgacaaaaacacattgattcggtgagataagattgcacgtaaacttagcaaaccaagccactataacaccttcaccgccaacattatat |
2125117 |
T |
|
| Q |
105 |
atatagatagcctaatatgtatgtagtaagacctaaagtcacttgggtaaaatggtgaatcaattttagagataacatcattgaagtaggaagaaaagct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2125118 |
atatagatagcctaatatgtatgtagtaagacctaaagtcacctgggtaaaatggtgaatcaattttagagataaaatcattgaagtaggaagaaaagct |
2125217 |
T |
|
| Q |
205 |
acgaagcattctagcattataat |
227 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2125218 |
acgaagcattctagcattataat |
2125240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University