View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12968_low_5 (Length: 725)
Name: NF12968_low_5
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12968_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 271 - 711
Target Start/End: Complemental strand, 917719 - 917279
Alignment:
| Q |
271 |
ttgcgactgttgaggttccaattgtggaaacaagcgagaacattgatgttgaaatgaatgaggagagtgaagaggtgaaaaaagatcaaaattgtgatgg |
370 |
Q |
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| T |
917719 |
ttgcgactgttgaggttccaattgtggaaacaagcgagaacattgatgttgaaatgaatgaggagagtgaagaggtgaaaaaagatcaaaattgtgatgg |
917620 |
T |
|
| Q |
371 |
gaagattgagtctgttgatgtaccagcagtggaggcaagtgagagcatcgatgttgaaatgtttgagaaggagagcgcggaaggaaacaaggatgaaaat |
470 |
Q |
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| T |
917619 |
gaagattgagtctgttgatgtaccagcagtggaggcaagtgagagcatcgatgttgaaatgtttgagaaggagagcgcggaaggaaacaaggatgaaaat |
917520 |
T |
|
| Q |
471 |
tctgatgggaagattgagactattgaggatccaatagtggaggctagtgagagcatggatgttgaagttgaggatttgatcgatgaaaggtgtgactttt |
570 |
Q |
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| T |
917519 |
tctgatgggaagattgagactattgaggatccaatagtggaggctagtgagagcatggatgttgaagttgaggatttgatcgatgaaaggtgtgactttt |
917420 |
T |
|
| Q |
571 |
ctgttggtgattttgtttggggaaagattaagagtcatctgtggtggccaggtcgggtttatgatccgtctgatgcgccggaacttgctttaaagctgaa |
670 |
Q |
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| T |
917419 |
ctgttggtgattttgtttggggaaagattaagagtcatctgtggtggccaggtcgggtttatgatccgtctgatgcgccggaacttgctttaaagctgaa |
917320 |
T |
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| Q |
671 |
acaaaagaatagactcttggtagcttactttgatggaacat |
711 |
Q |
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| T |
917319 |
acaaaagaatagactcttggtagcttactttgatggaacat |
917279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 271 - 711
Target Start/End: Original strand, 999965 - 1000408
Alignment:
| Q |
271 |
ttgcgactgttgaggttccaattgtggaaacaagcgagaacattgatgttgaaatgaatgaggag---agtgaagaggtgaaaaaagatcaaaattgtga |
367 |
Q |
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| T |
999965 |
ttgcgactgttgaggttccaatagtggaaacaagtgagaacattgatgttgagatgaatgagaaggatagcgaggagggagaaaagggtgaaaattgtga |
1000064 |
T |
|
| Q |
368 |
tgggaagattgagtctgttgatgtaccagcagtggaggcaagtgagagcatcgatgttgaaatgtttgagaaggagagcgcggaaggaaacaaggatgaa |
467 |
Q |
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| T |
1000065 |
tgggaagatcgagtctactgaggtaccgaaagtggaggcaagtgaaagtgtcgatgttgaaatgactgagaaggagggtgcggaaggaaaaaaagatgaa |
1000164 |
T |
|
| Q |
468 |
aattctgatgggaagattgagactattgaggatccaatagtggaggctagtgagagcatggatgttgaagttgaggatttgatcgatgaaaggtgtgact |
567 |
Q |
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| T |
1000165 |
aattgtgatgggaagactgagactattgaggatccaatagtggaggctagtgagagcatggatgttgaagttgacgatttgattgatgaaaggtgtgact |
1000264 |
T |
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| Q |
568 |
tttctgttggtgattttgtttggggaaagattaagagtcatctgtggtggccaggtcgggtttatgatccgtctgatgcgccggaacttgctttaaagct |
667 |
Q |
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| T |
1000265 |
tttctgttggagattttgtttggggaaagattaagagtcatccgtggtggccaggtcgggtttatgatctgtctaatgcgtcagaacttgctttaaagct |
1000364 |
T |
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| Q |
668 |
gaaacaaaagaatagactcttggtagcttactttgatggaacat |
711 |
Q |
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| T |
1000365 |
gaaacaaaataatagactcttggtagcttactttgatggaacat |
1000408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 918057 - 917876
Alignment:
| Q |
47 |
gatgggtgtggttgatactgaatcgatggaaccatttggggttgaaactggtttagctgaaaatgttaaggaagttgttaagagtagtgtttttgagacc |
146 |
Q |
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| T |
918057 |
gatgggtgtggttgatactgaatcgatggaaccatttggggttgaaactggtttagctgaaaatgttaaggaagttgttaagagtagtgtttttgagacc |
917958 |
T |
|
| Q |
147 |
gaggttttgattttgaaggagaatgattctcaggttgtggctgattctgaggtgaataatggggtgtcttctttgttgaaag |
228 |
Q |
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| T |
917957 |
gaggttttgattttgaaggagaatgattctcaggttgtggctgattctgaggtgaataatggggtgtcttctttgttgaaag |
917876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 538 - 711
Target Start/End: Complemental strand, 916165 - 915994
Alignment:
| Q |
538 |
ttgaggatttgatcgatgaaaggtgtgacttttctgttggtgattttgtttggggaaagattaagagtcatctgtggtggccaggtcgggtttatgatcc |
637 |
Q |
| |
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|||| |||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
916165 |
ttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagattaagagtcgtctgtggtggccaggttgggtttatgatcc |
916066 |
T |
|
| Q |
638 |
gtctgatgcgccggaacttgctttaaagctgaaacaaaagaatagactcttggtagcttactttgatggaacat |
711 |
Q |
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| T |
916065 |
gtctgatgcatcggaacttgctttaaagctgaaac--aagaataggctcttggtagcttactttgatggaacat |
915994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 999682 - 999781
Alignment:
| Q |
117 |
gaagttgttaagagtagtgtttttgagaccgaggttttgattttgaaggagaatgattctcaggttgtggctgattctgaggtgaataatggggtgtctt |
216 |
Q |
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| T |
999682 |
gaagttgttaagattagtgttttcgagaccgaggtttcgattttgaaggagaatgattctcaggctgtggctgattctgaggtgaataatggggtgtctt |
999781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 999551 - 999657
Alignment:
| Q |
112 |
ttaaggaagttgttaagagtagtgtttttgagaccgaggttttgattttgaaggagaatgattctcaggttgtggctgattctgaggtgaataatggggt |
211 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||| | |||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
999551 |
ttaaggaagttgttaagagcagtgttttcgagaccgaggtttcggttttgaaggaaaatgattctcaggttgtgaatgattctggggtgaataatggggt |
999650 |
T |
|
| Q |
212 |
gtcttct |
218 |
Q |
| |
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||||||| |
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| T |
999651 |
gtcttct |
999657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 999450 - 999517
Alignment:
| Q |
47 |
gatgggtgtggttgatactgaatcgatggaaccatttggggttgaaactggtttagctgaaaatgtta |
114 |
Q |
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| T |
999450 |
gatgggtgtggttgatactgaatcgatggaaccatttggagttgaagctagtttagctgaaaatgtta |
999517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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