View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_low_50 (Length: 215)

Name: NF12968_low_50
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_low_50
NF12968_low_50
[»] chr4 (16 HSPs)
chr4 (19-196)||(4925884-4926061)
chr4 (37-196)||(6794666-6794821)
chr4 (37-176)||(6649297-6649432)
chr4 (37-196)||(6813996-6814151)
chr4 (37-125)||(6535242-6535330)
chr4 (37-116)||(6834466-6834545)
chr4 (37-196)||(6589627-6589782)
chr4 (37-114)||(6624019-6624096)
chr4 (37-196)||(6726152-6726307)
chr4 (140-196)||(8413042-8413098)
chr4 (140-191)||(6834395-6834446)
chr4 (37-118)||(6499937-6500019)
chr4 (37-118)||(6547493-6547574)
chr4 (37-114)||(6751147-6751224)
chr4 (140-196)||(6751069-6751125)
chr4 (37-77)||(6771543-6771583)
[»] scaffold0373 (1 HSPs)
scaffold0373 (41-196)||(11486-11637)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 4926061 - 4925884
Alignment:
Q  19 aaatctcatagtgtagcaaaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4926061 aaatctcatagtgtagcaaaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatctt 4925962  T
Q  119 ttatcggtactggtcgattaattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  4925961 ctatcggtactggtcgattaattgaatgcatgccaacagagaagcttaatagattcacttttgtccatttcttctatt 4925884  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 6794821 - 6794666
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 136  Q
    |||||||| |||||||||| || ||||||||||||||||||  | ||| ||| ||| | |||||||||| ||||||||| || ||| ||   |||| | |    
T  6794821 aaataggaaccaagtacttcaagtgctagtggcaatctccctgagtaagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgct 6794722  T
Q  137 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
    |    |||||||||||||| ||||||||||| |||||||| ||  |||||||||||||||    
T  6794721 t----gaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt 6794666  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 6649432 - 6649297
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 136  Q
    |||||||| ||||| |||| || |||||| |||||||||||| | ||| ||| ||| | ||||||||||||||||||||||||| | ||   |||    |    
T  6649432 aaataggaaccaaggacttgaagtgctagaggcaatctcccagaataagcaatcacatctgttgaatgtgtagcaaaatcttttgtaggacttgg----t 6649337  T
Q  137 taattgaatgcatgccaacagaaaagcttaatagattcac 176  Q
    | ||||||||||||||||| |||||||| || ||||||||    
T  6649336 tgattgaatgcatgccaactgaaaagctcaagagattcac 6649297  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 6814151 - 6813996
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 136  Q
    ||||||||||| || |||| || |||||||||||||| |||| | |||  || ||| | |||| ||||| |||||||||||| ||||||   |||| | |    
T  6814151 aaataggacccgaggacttcaagtgctagtggcaatcccccagaataagaaatcacatctgttaaatgtttagcaaaatcttctatcggacttggttgct 6814052  T
Q  137 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
    |    |||||||||||||| ||||||||||| |||||||| ||  |||||||||||||||    
T  6814051 t----gaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt 6813996  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 6535242 - 6535330
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcgg 125  Q
    |||||||||||||| |||| || |||||| |||||||||||| | ||| ||| ||| |  |||||||||||||||||||||| ||||||    
T  6535242 aaataggacccaaggacttcaagtgctaggggcaatctcccagaataagcaatcacatccgttgaatgtgtagcaaaatcttctatcgg 6535330  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 6834545 - 6834466
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatc 116  Q
    |||||||| ||||| |||| || ||||||||||||||| ||| | ||| ||| ||| | |||||||||||||||||||||    
T  6834545 aaataggagccaaggacttcaagtgctagtggcaatcttccagaataagcaatcacatctgttgaatgtgtagcaaaatc 6834466  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 6589627 - 6589782
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 136  Q
    |||||||| ||||| |||| || |||||||||||||| |||| | ||| ||| ||| | ||||||||| ||||||||||||| | | ||   |||    |    
T  6589627 aaataggatccaaggacttcaagtgctagtggcaatcccccagaataagcaatcacatctgttgaatgcgtagcaaaatcttcttttggacttgg----t 6589722  T
Q  137 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
    |  ||||||||||||||||  || |||||||  ||||||  |||||||||||||||||||    
T  6589723 tgtttgaatgcatgccaactaaacagcttaagtgattcaattttgtccatttcttctatt 6589782  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 6624019 - 6624096
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaa 114  Q
    |||||| ||||||| |||| || ||||||||||||||||||  | ||| ||| ||| | |||||||||||||||||||    
T  6624019 aaatagcacccaagaacttcaagtgctagtggcaatctcccggaataagcaatcacatctgttgaatgtgtagcaaaa 6624096  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 6726307 - 6726152
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgat 136  Q
    ||||| |||||||  |||| || |||||||||||||| |||| | ||  ||| ||| | |||||||||| |||||||||||| | | || ||| |   ||    
T  6726307 aaatatgacccaatgacttcaagtgctagtggcaatcccccagaatatgcaatcacatctgttgaatgtttagcaaaatcttcttttgg-acttg---at 6726212  T
Q  137 taattgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
    |  |||||||||||||||| ||||||||| | |||||||| ||  |||||||||||||||    
T  6726211 tgcttgaatgcatgccaactgaaaagcttgagagattcactttcatccatttcttctatt 6726152  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 8413098 - 8413042
Alignment:
Q  140 ttgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
    |||||||||||||||| ||||||||| | |||||||| || ||||||||||| ||||    
T  8413098 ttgaatgcatgccaactgaaaagcttgagagattcactttcgtccatttcttttatt 8413042  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 6834446 - 6834395
Alignment:
Q  140 ttgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttctt 191  Q
    |||||||||||||||| |||||||| || |||||||| || |||||||||||    
T  6834446 ttgaatgcatgccaactgaaaagctcaagagattcactttcgtccatttctt 6834395  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 6499937 - 6500019
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggc-aatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatctt 118  Q
    |||||||||||||| |||| || |||||||||| |||| |||| | |||  |||||| | | |||||||||||||||||||||    
T  6499937 aaataggacccaagaacttcaagtgctagtggcaaatcccccagaataagaaaccacatcttttgaatgtgtagcaaaatctt 6500019  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 6547493 - 6547574
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatctt 118  Q
    |||||||| ||||| |||| || ||||||||| ||||| ||| | ||| |||||| || |||  ||||||||||||||||||    
T  6547493 aaataggagccaaggacttcaagtgctagtggaaatcttccagaataagcaaccatgtctgtcaaatgtgtagcaaaatctt 6547574  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 6751224 - 6751147
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaa 114  Q
    ||||||||||| || |||| || ||||||||| ||||||||| | ||| ||| ||| | | |||||||||||||||||    
T  6751224 aaataggacccgaggacttcaagtgctagtggtaatctcccagaataagcaatcacatcttttgaatgtgtagcaaaa 6751147  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 6751125 - 6751069
Alignment:
Q  140 ttgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
    |||||||||||||||| |||||||| || |||||||| || || |||||||| ||||    
T  6751125 ttgaatgcatgccaactgaaaagctcaagagattcactttcgttcatttcttttatt 6751069  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 6771583 - 6771543
Alignment:
Q  37 aaataggacccaagtactttaactgctagtggcaatctccc 77  Q
    |||||||||||||| |||| || ||||||||||||||||||    
T  6771583 aaataggacccaagaacttcaagtgctagtggcaatctccc 6771543  T

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Target: scaffold0373 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 11486 - 11637
Alignment:
Q  41 aggacccaagtactttaactgctagtggcaatctcccacattaaacaaccacgtttgttgaatgtgtagcaaaatcttttatcggtactggtcgattaat 140  Q
    |||| |||||||||| || ||||||||||||||||||  | ||| ||| ||| | |||||||||| ||||||||| || ||| ||   |||| | ||       
T  11486 aggaaccaagtacttcaagtgctagtggcaatctccctgagtaagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgctt--- 11582  T
Q  141 tgaatgcatgccaacagaaaagcttaatagattcacctttgtccatttcttctatt 196  Q
     |||||||||||||| ||||||||||| |||||||| ||  |||||||||||||||    
T  11583 -gaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt 11637  T

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