View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12968_low_8 (Length: 545)

Name: NF12968_low_8
Description: NF12968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12968_low_8
NF12968_low_8
[»] chr2 (25 HSPs)
chr2 (1-225)||(44934918-44935140)
chr2 (374-537)||(44760078-44760241)
chr2 (375-537)||(6404101-6404263)
chr2 (374-537)||(15911761-15911927)
chr2 (385-537)||(13278679-13278831)
chr2 (374-537)||(17308943-17309108)
chr2 (374-537)||(38703573-38703738)
chr2 (376-530)||(30490668-30490825)
chr2 (374-537)||(17137691-17137861)
chr2 (385-537)||(31994077-31994229)
chr2 (385-537)||(1209930-1210083)
chr2 (376-537)||(45117056-45117224)
chr2 (385-537)||(7942742-7942894)
chr2 (389-537)||(18137574-18137722)
chr2 (440-537)||(38207470-38207567)
chr2 (422-537)||(21485295-21485410)
chr2 (419-508)||(1114722-1114811)
chr2 (375-444)||(38208410-38208482)
chr2 (434-542)||(37127941-37128049)
chr2 (434-528)||(33945922-33946016)
chr2 (434-527)||(21649729-21649822)
chr2 (445-537)||(16739457-16739546)
chr2 (308-347)||(44929408-44929447)
chr2 (260-294)||(44929727-44929761)
chr2 (10-82)||(44925238-44925310)
[»] chr7 (20 HSPs)
chr7 (374-537)||(35794464-35794627)
chr7 (376-537)||(46254851-46255015)
chr7 (376-526)||(14816644-14816794)
chr7 (376-526)||(15263640-15263790)
chr7 (374-537)||(34847861-34848027)
chr7 (373-537)||(43458172-43458335)
chr7 (376-537)||(25529097-25529258)
chr7 (374-537)||(33950916-33951082)
chr7 (374-537)||(36312068-36312233)
chr7 (439-539)||(42321186-42321286)
chr7 (402-517)||(1377355-1377470)
chr7 (422-536)||(1852136-1852250)
chr7 (449-537)||(44863002-44863090)
chr7 (422-530)||(19646938-19647046)
chr7 (434-542)||(31326669-31326777)
chr7 (419-537)||(26188205-26188323)
chr7 (374-417)||(44866155-44866198)
chr7 (434-528)||(1906577-1906671)
chr7 (446-528)||(3601033-3601115)
chr7 (455-509)||(35585120-35585174)
[»] chr3 (26 HSPs)
chr3 (374-537)||(47646902-47647068)
chr3 (377-537)||(47013707-47013867)
chr3 (385-537)||(6936453-6936605)
chr3 (374-537)||(10509207-10509373)
chr3 (374-537)||(36402696-36402862)
chr3 (385-526)||(32529796-32529937)
chr3 (374-537)||(149312-149475)
chr3 (382-537)||(227615-227770)
chr3 (373-526)||(40937214-40937367)
chr3 (374-537)||(26502177-26502343)
chr3 (385-536)||(41193717-41193868)
chr3 (385-537)||(39353283-39353435)
chr3 (374-530)||(39586566-39586722)
chr3 (390-537)||(31765207-31765354)
chr3 (385-526)||(49166110-49166250)
chr3 (419-537)||(41174795-41174913)
chr3 (402-537)||(33843502-33843637)
chr3 (446-542)||(42899198-42899294)
chr3 (446-536)||(51328989-51329079)
chr3 (446-528)||(25214595-25214677)
chr3 (374-417)||(41182006-41182049)
chr3 (455-537)||(53393931-53394013)
chr3 (468-537)||(10494800-10494869)
chr3 (449-509)||(44207641-44207701)
chr3 (422-509)||(21979926-21980013)
chr3 (422-509)||(22002357-22002444)
[»] chr4 (34 HSPs)
chr4 (374-537)||(40728012-40728175)
chr4 (374-537)||(45229056-45229219)
chr4 (375-537)||(28780765-28780927)
chr4 (374-537)||(35158705-35158868)
chr4 (376-537)||(33281072-33281233)
chr4 (374-537)||(52416919-52417085)
chr4 (374-537)||(16023859-16024022)
chr4 (374-537)||(31093092-31093255)
chr4 (374-537)||(1602770-1602932)
chr4 (374-537)||(45462237-45462400)
chr4 (385-537)||(2013733-2013885)
chr4 (385-537)||(4189874-4190026)
chr4 (385-537)||(38551270-38551422)
chr4 (374-537)||(49374304-49374466)
chr4 (374-537)||(30003597-30003762)
chr4 (385-537)||(4048119-4048271)
chr4 (374-526)||(51538642-51538794)
chr4 (385-537)||(6963440-6963592)
chr4 (385-526)||(168540-168681)
chr4 (401-526)||(16451927-16452052)
chr4 (385-537)||(15542841-15542992)
chr4 (385-537)||(45924584-45924736)
chr4 (377-530)||(55136658-55136814)
chr4 (374-537)||(38218251-38218417)
chr4 (374-537)||(43841863-43842029)
chr4 (377-530)||(9036089-9036244)
chr4 (374-503)||(56463635-56463767)
chr4 (385-536)||(28310890-28311042)
chr4 (385-537)||(35319896-35320048)
chr4 (446-537)||(39807338-39807429)
chr4 (422-528)||(34953601-34953707)
chr4 (446-542)||(40602722-40602818)
chr4 (422-510)||(20516682-20516770)
chr4 (446-528)||(56084107-56084189)
[»] chr1 (29 HSPs)
chr1 (374-537)||(42882579-42882742)
chr1 (374-537)||(37952286-37952449)
chr1 (385-536)||(41091154-41091305)
chr1 (385-537)||(50261992-50262144)
chr1 (374-537)||(44496471-44496634)
chr1 (373-537)||(29961383-29961547)
chr1 (385-537)||(41900288-41900440)
chr1 (375-537)||(12700526-12700691)
chr1 (385-536)||(41086386-41086537)
chr1 (374-537)||(14587326-14587495)
chr1 (385-526)||(38860673-38860814)
chr1 (385-537)||(12528431-12528583)
chr1 (375-537)||(33801349-33801514)
chr1 (385-537)||(11952421-11952573)
chr1 (385-537)||(49851694-49851846)
chr1 (387-524)||(52632362-52632499)
chr1 (374-537)||(3517564-3517727)
chr1 (401-537)||(27216784-27216920)
chr1 (385-536)||(23984039-23984187)
chr1 (377-537)||(41723514-41723676)
chr1 (435-537)||(44757581-44757683)
chr1 (377-443)||(48964920-48964986)
chr1 (446-528)||(34549849-34549931)
chr1 (479-537)||(22858743-22858801)
chr1 (469-537)||(48964984-48965052)
chr1 (374-421)||(22858800-22858847)
chr1 (452-537)||(30518205-30518290)
chr1 (422-481)||(29913869-29913928)
chr1 (455-509)||(22334962-22335016)
[»] chr8 (22 HSPs)
chr8 (374-537)||(8239976-8240139)
chr8 (374-537)||(39318584-39318747)
chr8 (374-537)||(35684004-35684167)
chr8 (374-537)||(40105238-40105401)
chr8 (385-537)||(43098545-43098697)
chr8 (385-537)||(6347281-6347433)
chr8 (373-537)||(11076214-11076378)
chr8 (385-537)||(37098319-37098471)
chr8 (374-537)||(39260278-39260444)
chr8 (385-537)||(32337796-32337948)
chr8 (385-537)||(31701047-31701196)
chr8 (385-516)||(20091867-20091998)
chr8 (385-526)||(23144107-23144249)
chr8 (419-537)||(32947065-32947183)
chr8 (385-526)||(627371-627512)
chr8 (402-526)||(586428-586552)
chr8 (374-417)||(42131889-42131932)
chr8 (425-524)||(28284449-28284548)
chr8 (385-435)||(13546259-13546309)
chr8 (385-435)||(13678164-13678214)
chr8 (448-531)||(11457017-11457100)
chr8 (485-537)||(42131968-42132020)
[»] chr5 (24 HSPs)
chr5 (374-537)||(8734680-8734842)
chr5 (374-537)||(27114290-27114453)
chr5 (377-537)||(37012810-37012970)
chr5 (373-537)||(13822057-13822224)
chr5 (374-537)||(8197394-8197560)
chr5 (374-537)||(12785140-12785306)
chr5 (385-537)||(37030261-37030413)
chr5 (377-537)||(18808967-18809130)
chr5 (374-537)||(12723657-12723823)
chr5 (374-537)||(3556607-3556770)
chr5 (385-537)||(26279020-26279172)
chr5 (385-537)||(37883410-37883562)
chr5 (374-537)||(38679438-38679604)
chr5 (385-537)||(25977135-25977283)
chr5 (400-537)||(9715327-9715464)
chr5 (385-537)||(11719938-11720091)
chr5 (376-537)||(16513581-16513744)
chr5 (374-476)||(8299208-8299313)
chr5 (461-537)||(15858804-15858880)
chr5 (423-537)||(27495147-27495261)
chr5 (439-528)||(23252469-23252558)
chr5 (473-537)||(2606076-2606140)
chr5 (479-537)||(8300864-8300922)
chr5 (434-536)||(27690482-27690584)
[»] chr6 (10 HSPs)
chr6 (374-537)||(31722857-31723023)
chr6 (386-537)||(31318520-31318671)
chr6 (376-537)||(31271335-31271496)
chr6 (374-537)||(9304942-9305105)
chr6 (377-537)||(439017-439180)
chr6 (374-537)||(16395301-16395467)
chr6 (376-537)||(303740-303904)
chr6 (402-537)||(20818518-20818653)
chr6 (434-537)||(17519839-17519942)
chr6 (434-536)||(6837248-6837350)
[»] scaffold1301 (1 HSPs)
scaffold1301 (374-537)||(1641-1804)
[»] scaffold0054 (1 HSPs)
scaffold0054 (430-537)||(19067-19174)
[»] scaffold0160 (1 HSPs)
scaffold0160 (446-542)||(17301-17397)
[»] scaffold0048 (1 HSPs)
scaffold0048 (446-537)||(51827-51916)
[»] scaffold0210 (1 HSPs)
scaffold0210 (434-530)||(8159-8255)
[»] scaffold0001 (1 HSPs)
scaffold0001 (422-528)||(427220-427326)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 44935140 - 44934918
Alignment:
Q  1 caacattccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaataattttctttggtattgaaaatgtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44935140 caacattccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaatacttttctttggtattgaaaatgtac 44935041  T
Q  101 aataccattaacgtaagaaatatgcttcaaagggagaatgtcattcccggtggaactcatgtatgtagctaaagaagtctattctagagctatacaaaac 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  44935040 aataccattaacgtaagaaatatccttcaaagggagaatgtcattcccggtggaa--cctgtatgtagctaaagaagtctattctagagctatacaaaac 44934943  T
Q  201 caaatgaaattcaagccacagattc 225  Q
    |||||||||||||||||||||||||    
T  44934942 caaatgaaattcaagccacagattc 44934918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 44760241 - 44760078
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44760241 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 44760142  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  44760141 ataagcttccatcttcaagatataccttcattattcacatcacctcttttcttacattttcttc 44760078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 375 - 537
Target Start/End: Complemental strand, 6404263 - 6404101
Alignment:
Q  375 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 474  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  6404263 ggaaagatttagagccattaatgcgggtttggacggttacaaccactaacacgttttcgttgaccgtattaatgacctaggacttgttttaggctataaa 6404164  T
Q  475 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    || |||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  6404163 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 6404101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 15911927 - 15911761
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  15911927 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggcta 15911828  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | ||||||| ||||||||| |||||| ||||||||||| ||||||    
T  15911827 taaataggcttccatcttcaacaaataccttgattcttcacttcacctcttttcttacattttcttc 15911761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 13278831 - 13278679
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||    
T  13278831 agagccattaatgtggggttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaggacttgttttaggctataaataggcttcca 13278732  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  13278731 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 13278679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 17309108 - 17308943
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  17309108 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttcggcta 17309009  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||| | | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  17309008 taaataggcttccatcttc-acaaataccttcattcttcacttcacctcttttcttacattttcttc 17308943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 38703573 - 38703738
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38703573 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 38703672  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||  |||||||||||||| | ||||||| ||||||||| |||||| ||||||||||| ||||||    
T  38703673 taaat-ggcttccatcttcaacaaatacctttattcttcacttcacctcttttcttacattttcttc 38703738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 376 - 530
Target Start/End: Original strand, 30490668 - 30490825
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 472  Q
    ||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  30490668 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggccata 30490767  T
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 530  Q
    |||| |||| ||||||||| | |||||| |||||||||| ||| || |||||||||||    
T  30490768 aataggctttcatcttcaacaaatacctacattcttcacctcagctcttttcttacat 30490825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 17137691 - 17137861
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||| ||| |||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17137691 cggaaacatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 17137790  T
Q  471 taaataa----gcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||    ||||| |||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  17137791 taaataaacaggcttctatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 17137861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 31994077 - 31994229
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||    
T  31994077 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggtttcca 31994176  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    | ||||| | ||| |||||||| |||| |||||| ||||||| ||| ||||||    
T  31994177 tattcaacaaatatcttcattcatcacttcacctcttttcttccattttcttc 31994229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 1209930 - 1210083
Alignment:
Q  385 agagccattaa-tatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcc 483  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||    
T  1209930 agagccattaaatgtgggtttggacggttacaaccactaacacgttttcattgactttattaatgacctaggacttgttttaagctataaataggcttcc 1210029  T
Q  484 atcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| | | |||||| |||||||||| |||| | ||||||| ||| ||||||    
T  1210030 atcttcgacaaatacctgcattcttcacttcacatcttttcttccattttcttc 1210083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 537
Target Start/End: Complemental strand, 45117224 - 45117056
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 475  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  45117224 gaaagattcagagccgttaatgtggatttggacggttacaaccactaacacgttttcattgactctattaatgacctaagacttgttttaggctataaat 45117125  T
Q  476 aagcttccat-------cttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    | ||||||||       |||||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  45117124 aggcttccatcttccatcttcaacaaatactttcattcttcacttcacctcttttcttccattttcttc 45117056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 7942742 - 7942894
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |||||||| |  ||||||    
T  7942742 agagccattaatgtaggtttggacggttacaaccactaacatgttttcattgactgtagtaaggacctaggacttgttttatgctataaacagacttcca 7942841  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||| ||||| |||||| ||||||| ||| ||||||    
T  7942842 tcttcaacaaataccttcattgttcacttcacctcttttcttccattttcttc 7942894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 389 - 537
Target Start/End: Complemental strand, 18137722 - 18137574
Alignment:
Q  389 ccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatctt 488  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||| ||||  |||||    
T  18137722 ccattaatgtaggttgggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttattttaggctataaataggcttttatctt 18137623  T
Q  489 caagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| | ||||||||||||||||| ||| |||||||||| ||| ||||||    
T  18137622 caacaaataccttcattcttcacttcatcttttttcttccattttcttc 18137574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 440 - 537
Target Start/End: Complemental strand, 38207567 - 38207470
Alignment:
Q  440 gtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  38207567 gtattaatgacctaggacttgttttaggctataaatatgcttacatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 38207470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 422 - 537
Target Start/End: Original strand, 21485295 - 21485410
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 521  Q
    |||||||||| ||||| |||| | |||| ||||||||||||||||||||||||||||||| ||| ||||| | || | |||||||||||| |||||| ||    
T  21485295 aacacgtttttattgattgtacttatgacctaggacttgttttaggctataaataagctttcatattcaacaaattctttcattcttcacttcacctctt 21485394  T
Q  522 ttcttacatattcttc 537  Q
    ||||||||| ||||||    
T  21485395 ttcttacattttcttc 21485410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 419 - 508
Target Start/End: Complemental strand, 1114811 - 1114722
Alignment:
Q  419 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattctt 508  Q
    ||||| ||||||||||||||| || |||||| ||||||||||||||| |||||||||| |||| ||||||||| | ||||||||||||||    
T  1114811 actaatacgttttcattgactatactaatgacctaggacttgttttaagctataaataggctttcatcttcaacaaataccttcattctt 1114722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 38208482 - 38208410
Alignment:
Q  375 ggaaagattcagagccattaatatgggtttggacggtt---acaaccactaacacgttttcattgactgtatt 444  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| |||||    
T  38208482 ggaaagattcagagccattaatgtgggtttggacggttgcaacaaccactaacacgttttcattgaccgtatt 38208410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 434 - 542
Target Start/End: Original strand, 37127941 - 37128049
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 533  Q
    ||||||||||| || || |||||||||||||||||||||||||||||| ||| || || | || | |||||||||||| |||||| ||||||||| | ||    
T  37127941 ttgactgtatttatcatataggacttgttttaggctataaataagcttgcatttttaacaaattctttcattcttcacttcacctattttcttacttttt 37128040  T
Q  534 cttcgacat 542  Q
    |||| ||||    
T  37128041 cttcaacat 37128049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 528
Target Start/End: Complemental strand, 33946016 - 33945922
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 528  Q
    ||||||||| | ||||||||||||||||||||||||||| ||| | || ||||||||| | || |||||||||||||| |||||  |||||||||    
T  33946016 ttgactgtagttatgatctaggacttgttttaggctatatataggtttgcatcttcaacaaattccttcattcttcacttcaccacttttcttac 33945922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 434 - 527
Target Start/End: Original strand, 21649729 - 21649822
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttctta 527  Q
    ||||||||| | || ||||||||||||||| ||||||||||||  ||||||||||||  | ||  ||||||||||||| |||||||||||||||    
T  21649729 ttgactgtagttataatctaggacttgtttaaggctataaatagtcttccatcttcatcaaatttcttcattcttcacttcaccttttttctta 21649822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 537
Target Start/End: Original strand, 16739457 - 16739546
Alignment:
Q  445 aatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||| |||||||||||||||||||||||| | ||||  |||||||| || | |||| |||||||   |||||| ||||||||||| ||||||    
T  16739457 aatgacctaggacttgttttaggctataaaaaggcttggatcttcaacattttcctttattcttc---tcacctcttttcttacattttcttc 16739546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 44929447 - 44929408
Alignment:
Q  308 aaatgatgtgtccaaatacttatgaccagttaggactttc 347  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  44929447 aaatgatgtgtccaaatacttgtgatcagttaggactttc 44929408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 44929761 - 44929727
Alignment:
Q  260 atattgctttctttttgtaagtaaattgatataga 294  Q
    |||||||||||||||||||||||||||||| ||||    
T  44929761 atattgctttctttttgtaagtaaattgatttaga 44929727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 44925310 - 44925238
Alignment:
Q  10 attttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaataattttct 82  Q
    |||||||  ||||||||||| |   ||||| ||||||||||||||||| ||||||||  ||||||| ||||||    
T  44925310 attttggggtgaacaatggatactgcatgggacatgctcagtgtccatgttggatcaatttcaatacttttct 44925238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 35794627 - 35794464
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35794627 cggaaagatttagagccattaatatggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 35794528  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||||||||||||||||||||| || ||||||||||| ||||||    
T  35794527 ataggcttccatcttcaacaaataccttcattcttcacatcagctcttttcttacattttcttc 35794464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 376 - 537
Target Start/End: Complemental strand, 46255015 - 46254851
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 472  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46255015 gaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctata 46254916  T
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  46254915 aataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 46254851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 376 - 526
Target Start/End: Original strand, 14816644 - 14816794
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 475  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14816644 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 14816743  T
Q  476 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  14816744 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 14816794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 376 - 526
Target Start/End: Original strand, 15263640 - 15263790
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 475  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15263640 gaaagatccagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagcctataaat 15263739  T
Q  476 aagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    | |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  15263740 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 15263790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 34847861 - 34848027
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  34847861 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttatgcta 34847960  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  34847961 taaataggcttccatcttcaacagataccttcattcttcacttcacctcttttcttacattttcttc 34848027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 373 - 537
Target Start/End: Complemental strand, 43458335 - 43458172
Alignment:
Q  373 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 472  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  43458335 tcggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctata 43458236  T
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||| || | ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  43458235 aataggc-tacatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 43458172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 376 - 537
Target Start/End: Original strand, 25529097 - 25529258
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 475  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  25529097 gaaagattcagagtcattaatgtgggtttggacggttacaaccactgacacgtattcattgattgtattaatgacctaggacttgttttaggctataaat 25529196  T
Q  476 aagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    | |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  25529197 aggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 25529258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 33951082 - 33950916
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33951082 cggaacgattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 33950983  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||| ||| |||||||| | ||||||| ||||||||| | |||| ||||||||||| ||||||    
T  33950982 taaataagtttctatcttcaacaaatacctttattcttcactttacctcttttcttacattttcttc 33950916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 36312068 - 36312233
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  36312068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgtttttattgactgtattaatgacctagaacttgttttaggcta 36312167  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    | ||||  ||||||||||||| | ||| ||||||| ||||| |||||| ||||||||||| ||||||    
T  36312168 t-aatagacttccatcttcaacaaatatcttcattgttcacttcacctcttttcttacattttcttc 36312233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 439 - 539
Target Start/End: Original strand, 42321186 - 42321286
Alignment:
Q  439 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcg 538  Q
    ||||||||| | ||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| |||||| ||||||| ||| |||||||    
T  42321186 tgtattaataacctatgacttgttttaggttataaataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttcttccattttcttcg 42321285  T
Q  539 a 539  Q
    |    
T  42321286 a 42321286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 402 - 517
Target Start/End: Complemental strand, 1377470 - 1377355
Alignment:
Q  402 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 501  Q
    |||||| |||||  ||||| ||||||||||||||||||||| | ||||  || ||||| |||||||||||||||| |||||||||||||| | ||  |||    
T  1377470 tttggatggttagcaccacaaacacgttttcattgactgtacttatgacatatgacttattttaggctataaataggcttccatcttcaacaaatttctt 1377371  T
Q  502 cattcttcacatcacc 517  Q
    |||||||||| |||||    
T  1377370 cattcttcacttcacc 1377355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 422 - 536
Target Start/End: Complemental strand, 1852250 - 1852136
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 521  Q
    |||||||||||||||| |||| | |||| |||||  ||||||||||||||| |||||||| |||||| || | |  |||||||||||||| |||||| ||    
T  1852250 aacacgttttcattgattgtacttatgacctaggtattgttttaggctatatataagcttgcatcttgaacaaagtccttcattcttcacttcacctctt 1852151  T
Q  522 ttcttacatattctt 536  Q
    ||||||||| |||||    
T  1852150 ttcttacattttctt 1852136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 449 - 537
Target Start/End: Complemental strand, 44863090 - 44863002
Alignment:
Q  449 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||||||||||| |||||||||| ||||| ||||| || | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  44863090 atctaggacttgttttaagctataaatatgcttcaatcttgaacaaataccttcattcttcacttcacctcttttcttccattttcttc 44863002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 422 - 530
Target Start/End: Complemental strand, 19647046 - 19646938
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 521  Q
    ||||||||||  ||||||||| | ||||||||||||| |||| || ||||||||| ||||  |||||||| |  | ||||||||||| || |||||| ||    
T  19647046 aacacgttttacttgactgtaattatgatctaggactggtttaagactataaatatgcttgaatcttcaacaatttccttcattctttacttcacctctt 19646947  T
Q  522 ttcttacat 530  Q
    |||||||||    
T  19646946 ttcttacat 19646938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 542
Target Start/End: Original strand, 31326669 - 31326777
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 533  Q
    ||||||||| | ||||| ||||||||||||||  ||||||||| | || ||||||||| | ||  ||||||||||||| |||||| ||||||||| | ||    
T  31326669 ttgactgtaattatgatttaggacttgttttatactataaataggtttgcatcttcaacaaatttcttcattcttcacttcacctcttttcttacttttt 31326768  T
Q  534 cttcgacat 542  Q
    |||| ||||    
T  31326769 cttcaacat 31326777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 537
Target Start/End: Original strand, 26188205 - 26188323
Alignment:
Q  419 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 518  Q
    ||||||| |||||  |||| |||| | |||| ||||||| ||||||||| |||||||| || | ||| ||||| | || |||||||||||||| ||||||    
T  26188205 actaacatgttttgcttgattgtacttatgacctaggacatgttttaggttataaataggcatgcatgttcaacaaattccttcattcttcacttcacct 26188304  T
Q  519 tttttcttacatattcttc 537  Q
    |||| ||| ||| ||||||    
T  26188305 ttttactttcattttcttc 26188323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 44866198 - 44866155
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac 417  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  44866198 cggaaagattcagagccattattgtgggtttggacggttacaac 44866155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 528
Target Start/End: Original strand, 1906577 - 1906671
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 528  Q
    ||||||||| |  ||||||||||| ||||| || ||||||||| ||||  |||||||| |  | ||| |||||||||| |||||| |||||||||    
T  1906577 ttgactgtagttgtgatctaggacatgtttaagactataaataggcttgaatcttcaacaagttcctgcattcttcacttcacctcttttcttac 1906671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 528
Target Start/End: Original strand, 3601033 - 3601115
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 528  Q
    |||||| |||| |||||||||||||||||||  ||| ||||||||| | ||  |||| |||||||| ||| || |||||||||    
T  3601033 atgatcaaggatttgttttaggctataaatagacttgcatcttcaacaaatttcttcgttcttcacttcaactcttttcttac 3601115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 509
Target Start/End: Original strand, 35585120 - 35585174
Alignment:
Q  455 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 509  Q
    |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  35585120 gacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 35585174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 47647068 - 47646902
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47647068 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 47646969  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  47646968 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 47646902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 377 - 537
Target Start/End: Original strand, 47013707 - 47013867
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 476  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  47013707 aaagattcagagccattaatgtgggtttggatggttacaaccactaacacgttttcattgaccgtattaatgacctaggacttgttttaggctataaata 47013806  T
Q  477 agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
     | |||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  47013807 ggtttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 47013867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 6936605 - 6936453
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  6936605 agagccattaatatgggtttgggcggttacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggctataaataggcttcca 6936506  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | |||| |||||||||||| |||||||||||||| ||| ||||||    
T  6936505 tcttcaacaaatacattcattcttcacttcaccttttttctttcattttcttc 6936453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 10509207 - 10509373
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10509207 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttcttttaggcta 10509306  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  10509307 taaataggcttctatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 10509373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 36402696 - 36402862
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  36402696 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggtta 36402795  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  36402796 taaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 36402862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 385 - 526
Target Start/End: Complemental strand, 32529937 - 32529796
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  32529937 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattaactgtattaatgacctaggacttgttttaggctataaataggcttcca 32529838  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  32529837 tcttcaacaaataccttcattcttcacttcacctcttttctt 32529796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 149475 - 149312
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  149475 cggaaagattcagagtcattaacgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 149376  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | |||| | |||||||||| |||||| ||||||| ||| ||||||    
T  149375 ataggcttccatcttcaacaaatacttacattcttcacttcacctcttttcttccattttcttc 149312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 382 - 537
Target Start/End: Complemental strand, 227770 - 227615
Alignment:
Q  382 ttcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 481  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  227770 ttcagagccattgatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagactt 227671  T
Q  482 ccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| || | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  227670 ccatctttaacaaataccttcattcttcacttcacctcttttcttccattttcttc 227615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 373 - 526
Target Start/End: Complemental strand, 40937367 - 40937214
Alignment:
Q  373 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 472  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  40937367 tcggaaagattcagagtctttaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctata 40937268  T
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    |||| |||||||||||||| | |||| |||||| ||||| |||||| |||||||    
T  40937267 aataggcttccatcttcaacaaatactttcatttttcacttcacctcttttctt 40937214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 26502177 - 26502343
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  26502177 cggaaagattcagagccattaatgtgggtttggacagttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 26502276  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| ||||||| ||| ||||||    
T  26502277 taaataggcttccatcttcaacaaatacctacattcttcacttcacctcttttcttgcattttcttc 26502343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 385 - 536
Target Start/End: Original strand, 41193717 - 41193868
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  41193717 agagctattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaatatgcttcca 41193816  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 536  Q
    ||||||| | ||||||||||||| ||| |||||| ||||||| ||| |||||    
T  41193817 tcttcaacaaataccttcattctccacttcacctcttttcttccattttctt 41193868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 39353435 - 39353283
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  39353435 agagtcattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggatttgttttaggctataaataggcttcca 39353336  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | |||| |||||||||||| || ||| ||||||| ||| ||||||    
T  39353335 tcttcaacagatacattcattcttcacttcgcctcttttcttccattttcttc 39353283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 374 - 530
Target Start/End: Complemental strand, 39586722 - 39586566
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||    
T  39586722 cggaaagattcagagccattaatgtgggtttggatggttacaaccactaacacggtttcattgactgtattaatgacctaggatttgttttaagctataa 39586623  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 530  Q
    ||| |||||||| ||||| | |||| |||||||||||  |||||| |||||||||||    
T  39586622 ataggcttccattttcaacaaatactttcattcttcaattcacctattttcttacat 39586566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 390 - 537
Target Start/End: Original strand, 31765207 - 31765354
Alignment:
Q  390 cattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttc 489  Q
    ||||||| | |||||| ||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |||||||| ||||||||||||    
T  31765207 cattaatgtaggtttgaacggttacaaccactaacacgtttttattgactgcactaatgacctaggacttgttttaggttataaataggcttccatcttc 31765306  T
Q  490 aagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    || | ||||||||||||||||| ||||||| |||||| ||| ||||||    
T  31765307 aacaaataccttcattcttcacttcaccttctttcttccatcttcttc 31765354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 385 - 526
Target Start/End: Original strand, 49166110 - 49166250
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| | |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  49166110 agagtcattaatgtaggttaggacggttacaaccactaacatgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttcca 49166209  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    ||||| | | ||||||||||||||||| |||| | |||||||    
T  49166210 tcttc-acaaataccttcattcttcacttcacatcttttctt 49166250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 419 - 537
Target Start/End: Complemental strand, 41174913 - 41174795
Alignment:
Q  419 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 518  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||| |    
T  41174913 actaacacgttttcattgactgtattaatgacataggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacat 41174814  T
Q  519 tttttcttacatattcttc 537  Q
     ||||||||||| ||||||    
T  41174813 cttttcttacattttcttc 41174795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 402 - 537
Target Start/End: Complemental strand, 33843637 - 33843502
Alignment:
Q  402 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 501  Q
    ||||||| ||||  ||||| ||||||||||  ||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||| | || ||||    
T  33843637 tttggacagttagcaccacaaacacgttttatttgactgtggttatgatctaggacttgttttaggctataaataggtttccatcttcaacaaattcctt 33843538  T
Q  502 cattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||||| |||||| |||| |||||| ||||||    
T  33843537 cattcttcacttcacctctttttttacattttcttc 33843502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 446 - 542
Target Start/End: Complemental strand, 42899294 - 42899198
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcgacat 542  Q
    ||||| || |||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| |||||||||||||||||| |||||| ||||    
T  42899294 atgatatatgacttgttttaggctataaataggcttgcattttcaacaaattccttcattcttcacttcaccttttttcttacattttcttcaacat 42899198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 446 - 536
Target Start/End: Original strand, 51328989 - 51329079
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 536  Q
    |||| |||||||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| |||||| |||| |||||| |||||    
T  51328989 atgaactaggacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcacttcacctcttttattacattttctt 51329079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 528
Target Start/End: Original strand, 25214595 - 25214677
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 528  Q
    |||||||||||||||||||||||||||||||  ||| |||||| || | || |||||||||||||  |||||  |||||||||    
T  25214595 atgatctaggacttgttttaggctataaatagacttacatctttaacaaattccttcattcttcaattcaccacttttcttac 25214677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 41182049 - 41182006
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac 417  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  41182049 cggaaagattcagagccattaatgtgggtttggatggttacaac 41182006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 537
Target Start/End: Complemental strand, 53394013 - 53393931
Alignment:
Q  455 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||||||||||||||||| |||| ||| ||||| | || |||||||||||||| | | || ||||||| ||| ||||||    
T  53394013 gacttgttttaggctataaataggcttgcatgttcaacaaattccttcattcttcactttatctcttttctttcattttcttc 53393931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 537
Target Start/End: Original strand, 10494800 - 10494869
Alignment:
Q  468 ctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||| ||||  |||||||| |  | |||||||||||||| |||||||||||||||||| ||||||    
T  10494800 ctataaatatgcttagatcttcaacaatttccttcattcttcacttcaccttttttcttacattttcttc 10494869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 44207641 - 44207701
Alignment:
Q  449 atctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 509  Q
    ||||| |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||    
T  44207641 atctatgacttgttttaggctataaaaaagcttggatcttcaacattttccttcattcttc 44207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 509
Target Start/End: Original strand, 21979926 - 21980013
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 509  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  21979926 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 21980013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 509
Target Start/End: Original strand, 22002357 - 22002444
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 509  Q
    ||||||||||  ||||||||| | | || ||| ||||| ||| |||||||||| ||||||  ||||||||||| | ||||||||||||    
T  22002357 aacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagcttggatcttcaagattttccttcattcttc 22002444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 40728175 - 40728012
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    |||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40728175 cggaaagattcatagccattaatgtgggtatggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40728076  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||| ||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  40728075 ataggctttcatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 40728012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 45229219 - 45229056
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  45229219 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcatggactgtattaatgacctaggacttgttttaggctataa 45229120  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| | |||||||||||| | |||  ||||||||||||||||||| ||||||||||| ||||||    
T  45229119 ataggattccatcttcaacaaatatattcattcttcacatcacctcttttcttacattttcttc 45229056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 375 - 537
Target Start/End: Original strand, 28780765 - 28780927
Alignment:
Q  375 ggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaa 474  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  28780765 ggaaagattcagagccattaatgtggttttgggcggttacaaccactaacacgttttcattgactgtattaatgacatatgacttgttttaggctataaa 28780864  T
Q  475 taagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    || |||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  28780865 taggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 28780927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 35158868 - 35158705
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  35158868 cggaaagattcagagccattattgtgggtttggacggttagaaccactaacacgttttcatttactgtattaatgacctaggacttgttttaggctataa 35158769  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  35158768 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 35158705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 376 - 537
Target Start/End: Complemental strand, 33281233 - 33281072
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 475  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  33281233 gaaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgattgtattaatgacctaagacttgttttaggctataaat 33281134  T
Q  476 aagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    | |||| ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  33281133 aggcttacatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 33281072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 52416919 - 52417085
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  52416919 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaagacttgttttaggcta 52417018  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | ||||| ||||||||||| |||||| ||||||||||| ||||||    
T  52417019 taaataggcttccatcttcaacaaataccctcattcttcacttcacctcttttcttacattttcttc 52417085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 16024022 - 16023859
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  16024022 cggaaagattcagagtcattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaataacctatgacttgttttaggctataa 16023923  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||| ||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  16023922 ataggcttccatattcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 16023859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 31093255 - 31093092
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||    
T  31093255 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgatctcattgactgtattaatgacctatgacttgttttaggctataa 31093156  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  31093155 ataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 31093092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 1602932 - 1602770
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1602932 cggaaagattcagagtcattaatgtggatttggacggttacaaccactaacacgtttt-attgactgtattaatgacctaggacttgttttaggctataa 1602834  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  1602833 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 1602770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 45462400 - 45462237
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45462400 cggaaagattcagagccattattgtgggtttggacggttacaaccactgacacgttttcattgactgtattaatgatctatgacttgttttaggctataa 45462301  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||  ||| ||||||||| | ||| ||||||||||||| |||||| ||||||| ||| ||||||    
T  45462300 atagactttcatcttcaacaaatatcttcattcttcacttcacctattttcttccattttcttc 45462237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 2013733 - 2013885
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  2013733 agagtcattaatgtggatttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaattggcttcca 2013832  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  2013833 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 2013885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 4189874 - 4190026
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  4189874 agagtcattaatgtgggtttggacggttacaaccactaacacgtttttattgactatattaatgacctaggacttgttttaggctataaataggcttcca 4189973  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  4189974 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 4190026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 38551270 - 38551422
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  38551270 agagccattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacctaggacttgttttaggctataaataggcttcca 38551369  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  38551370 tcttcaacaaataccttcattcttcacttcacatcttttcttccattttcttc 38551422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 49374466 - 49374304
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  49374466 cggaaagattcagagccattaatgtgggtttggacagttacaaccactaacacgttttcattgactgta-taatgacctatgacttgttttaggctataa 49374368  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | | |||| |||||||||| |||||| ||||||| ||| ||||||    
T  49374367 ataggcttccatcttcaacaaaaacctccattcttcacttcacctcttttcttccattttcttc 49374304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 30003762 - 30003597
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgtt--ttaggctat 471  Q
    ||||||||||||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||  |||||||||    
T  30003762 cggaaagattcagagtcattattgtgggtttggacggttacaagcaataacacgttttcattgactgtattaatgacctaggacttgtttattaggctat 30003663  T
Q  472 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  30003662 aaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 30003597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 4048271 - 4048119
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||    
T  4048271 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgattgtattaataacctaggacttgttttaggctataaataggcttcca 4048172  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  4048171 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 4048119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 374 - 526
Target Start/End: Complemental strand, 51538794 - 51538642
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||| ||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  51538794 cggaaagattcagggccattaatgtgggtttggacagttgcaaccaccaacatgttttcattgactgtattaatgacttaggacttgttttaggctataa 51538695  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||| |||||||    
T  51538694 atatgcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 51538642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 6963592 - 6963440
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| || |||||| ||||||||| |||||||||||||||| |||||||    
T  6963592 agagccattaatgtgggtttggacggttacaatcactaacacattttcattgactatagtaatgacctaggacttattttaggctataaataggcttcca 6963493  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  6963492 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 6963440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 385 - 526
Target Start/End: Original strand, 168540 - 168681
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||  ||||||    
T  168540 agagccactaatgtgggtttggacgtttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttagactataaatagccttcca 168639  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  168640 tcttcaacaaataccttcattcttcacttcacctcttttctt 168681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 16452052 - 16451927
Alignment:
Q  401 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 500  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||    
T  16452052 gtttgaacggttacaaccactaacacgttttcattgactgtagtaatgatctaggacttgttttaggctataaataggcttccatcttcagcagatacct 16451953  T
Q  501 tcattcttcacatcaccttttttctt 526  Q
    ||||||||||| |||||| |||||||    
T  16451952 tcattcttcacttcacctcttttctt 16451927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 15542841 - 15542992
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    ||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  15542841 agagcaattaatgtgggtttggacggttaaaac-actaacacgttttcattgactatagtaatgacctaggacttgttttaggctataaataggcttcca 15542939  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  15542940 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 15542992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 45924736 - 45924584
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| |    
T  45924736 agagccattaatgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataaataggtttcaa 45924637  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | |||||||||||| |||| | |||| ||||||| ||| ||||||    
T  45924636 tcttcaacaaataccttcattcctcacttaacctcttttcttccattttcttc 45924584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 377 - 530
Target Start/End: Complemental strand, 55136814 - 55136658
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||| | |||||||| ||||||||||||||||||||   |||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||    
T  55136814 aaagattcaaatccattaatgtgggtttggacggttacaacaaccactaacacgttatcattgattgtattaatgacctatgacttgttttaggctataa 55136715  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 530  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  55136714 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttacat 55136658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 38218251 - 38218417
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||| || ||||||| |||| |||||||||||| ||||||   ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||    
T  38218251 cggaaaggtttagagccactaatgtgggtttggacgattacaacaaccactaacacgttttcattgactgtattaatgacctagaacttgttttagccta 38218350  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | |||||| |||||||||| |||||| |||| |||||| ||||||    
T  38218351 taaataggcttccatcttcaacaaatacctacattcttcacttcacctctttttttacattttcttc 38218417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 43841863 - 43842029
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||||||||| |||||||||| |||||||||||||||||||   ||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43841863 cggaaagattcatagccattaatgtgggtttggacggttacaacaaccactaagacgttttaattgactgtattaatgacctatgacttgttttaggcta 43841962  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||  ||| ||||||||| | |||| |||||||||||  |||||| ||||||||||| ||||||    
T  43841963 taaatagactttcatcttcaacaaatacattcattcttcaattcacctattttcttacattttcttc 43842029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 377 - 530
Target Start/End: Original strand, 9036089 - 9036244
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    |||||||||||| ||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  9036089 aaagattcagagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggactt-ttttaggctataa 9036187  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 530  Q
    ||| |||| ||||||||| | |||| |||||||||||  |||||| |||||||||||    
T  9036188 ataggctttcatcttcaacaaatacattcattcttcatttcacctcttttcttacat 9036244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 374 - 503
Target Start/End: Original strand, 56463635 - 56463767
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||||| || ||||||||||| |||||||||||||||||||   |||||||||| |||||||||||||||||||||| |  |||||||||||||||||    
T  56463635 cggaaagactcggagccattaatgtgggtttggacggttacaacaaccactaacacattttcattgactgtattaatgaccgtggacttgttttaggcta 56463734  T
Q  471 taaataagcttccatcttcaagatataccttca 503  Q
    |||||| |||||||||||||| | |||||||||    
T  56463735 taaataggcttccatcttcaacaaataccttca 56463767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 385 - 536
Target Start/End: Original strand, 28310890 - 28311042
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggac-ttgttttaggctataaataagcttcc 483  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||  ||||||||| ||||||    
T  28310890 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgaccgtattaatgacctaagactttgttttatactataaataggcttcc 28310989  T
Q  484 atcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 536  Q
    |||||||| | ||||||||||||||||  |||||| |||| || ||| |||||    
T  28310990 atcttcaacaaataccttcattcttcatttcacctcttttattccattttctt 28311042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 35319896 - 35320048
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| || ||||||||||||||||| ||||||||||||||||| ||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  35319896 agagtcattaatgtgagtttggacggttacaactactaacacgttttcattaactatagtaatgacctatgacttgttttaagctataaataggcttcca 35319995  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | |||| |||||||| ||| |||||| ||||||| ||| ||||||    
T  35319996 tcttcaacaaatactttcattctccacttcacctcttttcttccattttcttc 35320048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 446 - 537
Target Start/End: Original strand, 39807338 - 39807429
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||| | || |||||||||||||| |||||| ||||||||||| ||||||    
T  39807338 atgatctaggatttgttttacgctataaataggctttcatcttcaacaaattccttcattcttcacttcacctcttttcttacattttcttc 39807429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 528
Target Start/End: Original strand, 34953601 - 34953707
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 521  Q
    ||||||||||  ||||||||| | |||||||||||||| |||||||||||||||| | || ||||||||| | |   ||| ||||||||| |||||||||    
T  34953601 aacacgttttatttgactgtagttatgatctaggacttattttaggctataaataggtttgcatcttcaacaaacttctttattcttcacttcacctttt 34953700  T
Q  522 ttcttac 528  Q
    |||||||    
T  34953701 ttcttac 34953707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 542
Target Start/End: Complemental strand, 40602818 - 40602722
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcgacat 542  Q
    |||||||||||||||||| | |||||||||| |||| ||||||||| | |  |||||||||||||| |||||| ||||||||| | |||||| ||||    
T  40602818 atgatctaggacttgtttaatgctataaataggcttacatcttcaacaaactccttcattcttcacttcacctcttttcttactttttcttcaacat 40602722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 510
Target Start/End: Complemental strand, 20516770 - 20516682
Alignment:
Q  422 aacacgttttcattgactgta-ttaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttca 510  Q
    ||||||||||  ||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||||||||| | || |||||||||||||    
T  20516770 aacacgttttatttgactgtagttaat-atctaggatttgttttaggctataaataggcttgcatcttcaacaaattccttcattcttca 20516682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 528
Target Start/End: Complemental strand, 56084189 - 56084107
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 528  Q
    |||||||||||||||||| |||||||||||| |||| ||| ||||| | || | |||||||||||| || | | |||||||||    
T  56084189 atgatctaggacttgtttaaggctataaatatgcttgcatattcaacaaattcattcattcttcacttctcatcttttcttac 56084107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 42882579 - 42882742
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  42882579 cggaaagattcagagccattattgtgggtttggatggttacaaccactaacacattttcattgactgtattaatgacctaggacttgttttaggctataa 42882678  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||    
T  42882679 ataggcttccatcttcaacaaatatcttcattcttcacatcacctcttttcttacattttcttc 42882742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 37952449 - 37952286
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37952449 cggaaagattcagagtcattaatgtgggtttggaccgttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 37952350  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    | | |||||||||||||| | ||||||||||||||||| |||||| |||||||| || ||||||    
T  37952349 aaaggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttatattttcttc 37952286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 385 - 536
Target Start/End: Complemental strand, 41091305 - 41091154
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  41091305 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 41091206  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 536  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| |||||    
T  41091205 tcttcaacaaataccttcattcttcacttcacttcttttcttccattttctt 41091154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 50261992 - 50262144
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  50261992 agagtcattaatgtgggtttgaacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 50262091  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  50262092 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 50262144  T

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Target: chr1; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 44496634 - 44496471
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44496634 cggaaagattcaaagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 44496535  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||| ||||||||| | |||| ||||||||||||  ||||| ||||||| ||| ||||||    
T  44496534 ataggctttcatcttcaacaaatactttcattcttcactccacctattttcttccattttcttc 44496471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 373 - 537
Target Start/End: Complemental strand, 29961547 - 29961383
Alignment:
Q  373 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 472  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||  || ||||| ||||||||||||    
T  29961547 tcggaaagattcagagccattaatgtgggtttgaacggttacaaccactaacacgttttcattgattgtattaatgacttaagacttattttaggctata 29961448  T
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||  ||||||||||||| | ||||||||||||||||| |||| | ||||||||||| ||||||    
T  29961447 aatagacttccatcttcaacaaataccttcattcttcacttcacatcttttcttacattttcttc 29961383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 41900288 - 41900440
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  41900288 agagccattaatgtgggtttggacggttacaaccactaacacattttcattgactgtattaatgacctatgacttgttttaggctataaataggcttcca 41900387  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| | |||| ||||||| ||| ||||||    
T  41900388 tcttcaataaataccttcattcttcaccttacctcttttcttccattttcttc 41900440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 375 - 537
Target Start/End: Original strand, 12700526 - 12700691
Alignment:
Q  375 ggaaagattcagagccattaatatgggtttggacggttacaacca---ctaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 471  Q
    |||||||||||||||||||||| || |||||||| ||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12700526 ggaaagattcagagccattaatgtgcgtttggacagttacaaccaccactaacacattttcattgactgtattaatgatctaggacttgttttaggctat 12700625  T
Q  472 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||| |||||||||||||| | ||| ||||||||||||| | |||| ||||||||||| ||||||    
T  12700626 aaataggcttccatcttcaacaaatatcttcattcttcacttgacctcttttcttacattttcttc 12700691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 385 - 536
Target Start/End: Complemental strand, 41086537 - 41086386
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  41086537 agagccattaatgtgggtttggaaggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagactataaataggcttcca 41086438  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 536  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| |||||    
T  41086437 tcttcaacaaataccttcattcttcacttcacttcttttcttccattttctt 41086386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 14587326 - 14587495
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||||||||||||||||| || |||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14587326 cggaaagattcagagccatttatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacttaggacttgttttaggcta 14587425  T
Q  471 taaata---agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||    |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  14587426 taaataggcggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 14587495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 385 - 526
Target Start/End: Complemental strand, 38860814 - 38860673
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||    
T  38860814 agagccattaatgtgggtttggacggttactaccactaacacgttttcattgaatgtattaatgatctatgacttgttttaggctataaataggctttca 38860715  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    ||||||| | ||||||||||||||||| |||||| |||||||    
T  38860714 tcttcaacaaataccttcattcttcacttcacctcttttctt 38860673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 12528583 - 12528431
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  12528583 agagtcattaatatgaatttcgacggttacaaccaccaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaataggcttcca 12528484  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  12528483 tcttcaacaaataccttcattcttcacttcacctattttcttccattttcttc 12528431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 375 - 537
Target Start/End: Complemental strand, 33801514 - 33801349
Alignment:
Q  375 ggaaagattcagagccattaatatgggtttggacggttaca---accactaacacgttttcattgactgtattaatgatctaggacttgttttaggctat 471  Q
    |||||||||||||| ||||||| |||||||||||| |||||   ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  33801514 ggaaagattcagagtcattaatgtgggtttggacgattacagcaaccactaacacgttttcattgactgtaataatgacttaggacttgttttaggctat 33801415  T
Q  472 aaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||| |||||||||||||| | |||||| |||||||||| |||||| ||||||||||| ||||||    
T  33801414 aaataggcttccatcttcaaaaaatacctacattcttcacttcacctcttttcttacattttcttc 33801349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 11952421 - 11952573
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||   | ||||| |||||||||||||||| |||||||    
T  11952421 agagccattaatgtgagtttggacggttacaaccactaacacgttttcattgactgtattaatgacaaaagacttattttaggctataaataggcttcca 11952520  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  11952521 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 11952573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 49851846 - 49851694
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||    
T  49851846 agagccatcaatgtaggtttggacggttacaaccactaacatgttttcattgactgtactaatgacctaggacttgttttaggctataaataggctttca 49851747  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  49851746 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 49851694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 387 - 524
Target Start/End: Original strand, 52632362 - 52632499
Alignment:
Q  387 agccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatc 486  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  52632362 agccattaatgtgggtttagacggttacaaccactaacacgttttcattgattgtattaatgacctaggacttgttttaggctataaataggcttccatc 52632461  T
Q  487 ttcaagatataccttcattcttcacatcaccttttttc 524  Q
    ||||| | ||  ||||||||||||| |||||| |||||    
T  52632462 ttcaacaaatgtcttcattcttcacttcacctcttttc 52632499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 3517564 - 3517727
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||   |||| |||||| |||||||||||||    
T  3517564 cggaaagattcagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgta---atgacctaggagttgttttaggcta 3517660  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||  |||  |||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  3517661 taaatagacttttatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 3517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 401 - 537
Target Start/End: Complemental strand, 27216920 - 27216784
Alignment:
Q  401 gtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacct 500  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||| ||||||||| | |||| |    
T  27216920 gtttggacggttacaaccactaacacgttttcattgattgtactaatgacctaggacttgttttaggctataaataggctttcatcttcaaaaaatactt 27216821  T
Q  501 tcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||||| |||||| ||||||| ||| ||||||    
T  27216820 tcattcttcacttcacctcttttcttccattttcttc 27216784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 385 - 536
Target Start/End: Original strand, 23984039 - 23984187
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| |||||||  ||||||||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||||||||||||||| | |||||    
T  23984039 agagtcattaatgagggtttggacggttacaaccactaacatgttttcattgactgta---atgacctaggacttgttttaggctataaataggtttcca 23984135  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattctt 536  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| |||||    
T  23984136 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttctt 23984187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 377 - 537
Target Start/End: Complemental strand, 41723676 - 41723514
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggt---tacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    |||||||||||||||||||| |||||||||||| |    |||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  41723676 aaagattcagagccattaatgtgggtttggacgataacaacaaccaccaacacgttttcattgactatattaatgaccta-gacttgttttaggctataa 41723578  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||| ||||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  41723577 ataggctttcatcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 41723514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 435 - 537
Target Start/End: Original strand, 44757581 - 44757683
Alignment:
Q  435 tgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattc 534  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||| ||||||||||| |||    
T  44757581 tgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttc 44757680  T
Q  535 ttc 537  Q
    |||    
T  44757681 ttc 44757683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 48964920 - 48964986
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtat 443  Q
    |||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  48964920 aaagattcagagtcattaatgtgggtttggacggttagaatcactaacacgttttcattgactgtat 48964986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 446 - 528
Target Start/End: Complemental strand, 34549931 - 34549849
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 528  Q
    ||||||||||||||||||||||||||||||| | || ||| ||||| | || |||||||||||||| |||||| |||||||||    
T  34549931 atgatctaggacttgttttaggctataaataggtttgcatattcaacaaattccttcattcttcacgtcacctgttttcttac 34549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 22858801 - 22858743
Alignment:
Q  479 cttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  22858801 cttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 22858743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 48964984 - 48965052
Alignment:
Q  469 tataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||| |||||||||||||| | |||| ||||||||||| ||||||| ||||||||||| ||||||    
T  48964984 tataaataggcttccatcttcaacaaatacgttcattcttcatatcacctcttttcttacattttcttc 48965052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 22858847 - 22858800
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccact 421  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  22858847 cggaaagattcagagccattaatgtgggttttgacggttacaaccact 22858800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 537
Target Start/End: Original strand, 30518205 - 30518290
Alignment:
Q  452 taggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||||||||||||||||||| |||| ||| ||||| | ||  ||||||||||||| | | || ||||||| ||| ||||||    
T  30518205 taggacttgttttaggctataaataggcttgcatgttcaaaaaatttcttcattcttcacttaatctcttttctttcattttcttc 30518290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 29913928 - 29913869
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagctt 481  Q
    ||||||||||||||| ||||| | || | |||||||||||||| || |||||||||||||    
T  29913928 aacacgttttcattgtctgtacttataacctaggacttgttttgggttataaataagctt 29913869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 509
Target Start/End: Original strand, 22334962 - 22335016
Alignment:
Q  455 gacttgttttaggctataaataagcttccatcttcaagatataccttcattcttc 509  Q
    |||||||||||||||||||| | ||||| |||||||| || | ||||||||||||    
T  22334962 gacttgttttaggctataaaaaggcttcgatcttcaacattttccttcattcttc 22335016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 8239976 - 8240139
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||    
T  8239976 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattaactgtattaataacataggacttgttttaggctataa 8240075  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||||||||||| ||| ||||||    
T  8240076 ataggcttccatcttcaacaaataccttcattcttcacttcaccttttttcttccattttcttc 8240139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 39318584 - 39318747
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  39318584 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 39318683  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||||||||||| ||||| |||||| ||||||| ||| ||||||    
T  39318684 ataggcttccatcttcaacaaataccttcattattcacttcacctcttttcttccattttcttc 39318747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 35684004 - 35684167
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||    
T  35684004 cggaaagattcagagccattattgtgggtttggacggttacaaccactaacacgttttcattgactgttttaatgacccagtacttgttttaggctataa 35684103  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||||||||||||||||| |||||  ||||||| ||| ||||||    
T  35684104 ataggcttccatcttcaacaaataccttcattcttcacttcaccaattttcttccattttcttc 35684167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 40105238 - 40105401
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40105238 cggaaagattcagagtcattattgtgggtttggacggttgcaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 40105337  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||| ||||||||| | ||||||||||||||||  |||||| ||||||| ||| ||||||    
T  40105338 ataggctttcatcttcaacaaataccttcattcttcaattcacctcttttcttccattttcttc 40105401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 43098545 - 43098697
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  43098545 agagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactataataatgacctaggacttgttttaggctataaataggcttcca 43098644  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  43098645 tcttcaacaaatacattcattcttcacttcacctcttttcttccattttcttc 43098697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 6347433 - 6347281
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| | |||||||    
T  6347433 agagccattaatgtgggtttggacggttacaaccactaacacgttttcatttactgtactaatgacctaggacttgttttaggctataaacatgcttcca 6347334  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||  |||||| ||||||| ||| ||||||    
T  6347333 tcttcaacaaataccttcattcttcatttcacctcttttcttccattttcttc 6347281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 373 - 537
Target Start/End: Complemental strand, 11076378 - 11076214
Alignment:
Q  373 tcggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 472  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  11076378 tcggaaagattcagagtcattattgtgggtttggacggttacaaccactaacacgtttttattgactgtattaatgacctaggacttgttttagactata 11076279  T
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||  ||||||| ||||| | ||||||| ||||||||| |||||| ||||||| ||| ||||||    
T  11076278 aatagacttccattttcaacaaataccttaattcttcacttcacctcttttcttccattttcttc 11076214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 37098471 - 37098319
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||| ||    
T  37098471 agagccattaatgtgggtttagacggttacaaccactaacacgtttttattgactgtattaatgacatgggacttgttttaggctataaataagctttca 37098372  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  37098371 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 37098319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 39260278 - 39260444
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccac---taacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||   ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  39260278 cggaaagattcagagtcattaatgtgggtttggacggttacaacaaccattaacacgtttttattgactgtattaatgacctaggacttgttttaggcta 39260377  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| ||||| |||||||| | |||| |||||||||||| |||||| ||||||||||| ||||||    
T  39260378 taaataggcttctatcttcaacaaatacattcattcttcacttcacctcttttcttacattttcttc 39260444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 32337948 - 32337796
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||| ||| | ||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  32337948 agagccatcaatgtaggtttggacggttacaatcactaacacgttttcattgattgtactaatgacctaggacttggtttaggctataaataggcttcca 32337849  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  32337848 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 32337796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 31701047 - 31701196
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    ||||| |||||| |||||||   |||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  31701047 agagctattaatgtgggttt---cggttataaccaataacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggcttcca 31701143  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  31701144 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 31701196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 385 - 516
Target Start/End: Complemental strand, 20091998 - 20091867
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||| ||| |||||||    
T  20091998 agagccattaatgtcggtttggacagttacaaccactaacacgttttcattgaccgtagtaatgacataggacttgttttaggctatatataggcttcca 20091899  T
Q  485 tcttcaagatataccttcattcttcacatcac 516  Q
    ||||||| | ||||||||||||||||| ||||    
T  20091898 tcttcaacaaataccttcattcttcacttcac 20091867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 385 - 526
Target Start/End: Original strand, 23144107 - 23144249
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaa-tgatctaggacttgttttaggctataaataagcttcc 483  Q
    |||| ||||||| | |||||||||| ||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||    
T  23144107 agagtcattaatgtaggtttggacgattacaaccactaacatgttttcattgactgtagtaaatgacctaggacttgttttaggttataaataggcttcc 23144206  T
Q  484 atcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    |||||||| | ||||||||||||||||| |||||| |||||||    
T  23144207 atcttcaacaaataccttcattcttcacttcacctcttttctt 23144249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 419 - 537
Target Start/End: Complemental strand, 32947183 - 32947065
Alignment:
Q  419 actaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacct 518  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||| ||||||    
T  32947183 actaacacgttttcattgactgtattaatgacctaggacttgttttaggctataagtaggcttctatcttcaacaaataccttcattcttcacttcacct 32947084  T
Q  519 tttttcttacatattcttc 537  Q
     ||||||||||| ||||||    
T  32947083 cttttcttacattttcttc 32947065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 385 - 526
Target Start/End: Complemental strand, 627512 - 627371
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||| ||| | | |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |    
T  627512 agagccatcaatgtagctttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttcta 627413  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttctt 526  Q
    ||||||| | |||||||||||||||||  ||||| |||||||    
T  627412 tcttcaacaaataccttcattcttcactccacctcttttctt 627371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 402 - 526
Target Start/End: Original strand, 586428 - 586552
Alignment:
Q  402 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 501  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| |||||||| | |||||||    
T  586428 tttggacggttacaaccactaacaagttttcattgactgtactaatgaactaagacttgttttaggctataaataggcttctatcttcaacaaatacctt 586527  T
Q  502 cattcttcacatcaccttttttctt 526  Q
    ||||||||||  ||||| |||||||    
T  586528 cattcttcactccacctcttttctt 586552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 42131889 - 42131932
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42131889 cggaaagattcagagccattaatatgggtttggacggttacaac 42131932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 524
Target Start/End: Complemental strand, 28284548 - 28284449
Alignment:
Q  425 acgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttc 524  Q
    |||||||  ||||| ||| | |||||||||||| ||||||||||| |||||| | || ||||||||| | || |||||||||||||| |||||| |||||    
T  28284548 acgttttatttgaccgtagttatgatctaggacatgttttaggctgtaaataggtttgcatcttcaacaaattccttcattcttcacttcacctcttttc 28284449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 13546259 - 13546309
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 435  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13546259 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13546309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 13678214 - 13678164
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcatt 435  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  13678214 agagccattaatgtgtgtttggacggttacaaccactaacagcttttcatt 13678164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 531
Target Start/End: Complemental strand, 11457100 - 11457017
Alignment:
Q  448 gatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacata 531  Q
    |||||| ||||||||||||| |||||| | |||||||||||||| | ||  |||| || ||||| | |||| ||||||||||||    
T  11457100 gatctatgacttgttttaggttataaacaggcttccatcttcaacaaatttcttcctttttcacttaacctcttttcttacata 11457017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 42131968 - 42132020
Alignment:
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||| ||||| ||||||    
T  42131968 tcttcaacaaataccttcattcttcacttcacctcttttcgtacattttcttc 42132020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 9e-59; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 8734842 - 8734680
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8734842 cggaaagattcagagccattaatgtgggtttggacgattacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 8734743  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| ||||||||| | || | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  8734742 ataggcttccatc-tgaacaaataccttcattcttcacttcacctcttttcttacattttcttc 8734680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 27114453 - 27114290
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27114453 cggaaagattcagagccattaatgtgggtttggacggttacaaccaccaacacgttttcattgactgtattaatgacataggacttgttttaggctataa 27114354  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| |||||||||||||| | ||| ||||||||||||| |||||| ||||||| ||| ||||||    
T  27114353 ataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttcttccattttcttc 27114290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 377 - 537
Target Start/End: Complemental strand, 37012970 - 37012810
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaata 476  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  37012970 aaagattcagagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtatgaatgacctagaacttgttttaggctataaata 37012871  T
Q  477 agcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
     |||||||||||||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  37012870 ggcttccatcttcaacaaatactttcattcttcacttcacctcttttcttccattttcttc 37012810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 373 - 537
Target Start/End: Original strand, 13822057 - 13822224
Alignment:
Q  373 tcggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggct 469  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13822057 tcggaaagattcagagccattaatgtggatttgaacggttacaacaaccactaacacgttttcattgactgtattaatgatctatgacttgttttaggct 13822156  T
Q  470 ataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | |||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  13822157 ataaataggtttccatcttcaacaaataccttcattcttcacctcacctcttttcttacattttcttc 13822224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 8197560 - 8197394
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||||||| |||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  8197560 cggaaagatttagagccattaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttagacta 8197461  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | ||||||||||||||||| | |||| ||||||||||| ||||||    
T  8197460 taaataggcttccatcttcaacaaataccttcattcttcactttacctattttcttacattttcttc 8197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 12785306 - 12785140
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12785306 cggaaagattcatagccgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12785207  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| ||||| |||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  12785206 taaataggcttcaatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 12785140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 37030261 - 37030413
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||    
T  37030261 agagccattaatgtgggtttggatggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataaatagacttcca 37030360  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  37030361 tcttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 37030413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 377 - 537
Target Start/End: Complemental strand, 18809130 - 18808967
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    |||||||||||||||||||| | ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  18809130 aaagattcagagccattaatgtaggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctatgacttgttttaggctataa 18809031  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  18809030 atagtcttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 18808967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 12723823 - 12723657
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||||||||| || | ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12723823 cggaaagattcatagtcgttaatgtgggtttggacggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 12723724  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| | || ||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  12723723 taaataggttttcatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 12723657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 3556770 - 3556607
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||| ||||| ||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3556770 cggaaagattcggagccgttattgtgggtttggacgattacaagcactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 3556671  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| ||||||||||| || | || |||||||||||||| |||||| ||||||| ||| ||||||    
T  3556670 atatgcttccatctttaacaaattccttcattcttcacttcacctcttttcttccattttcttc 3556607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 26279172 - 26279020
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||    
T  26279172 agagtcattaatgtaggtttggacggttacaaccactaacacgttttcattgactgtactaatgacccaggacttgttttaggctataaataggcttcca 26279073  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  26279072 tcttcaacaaataccttcattcttcacttcacttcttttcttccattttcttc 26279020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 385 - 537
Target Start/End: Complemental strand, 37883562 - 37883410
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||| ||| ||||||||||| |||||||||| |||||||    
T  37883562 agagccattaatgtgggtttggacggttacaaccactaacatgttttcattgactatagtaatgacctaagacttgttttaagctataaataggcttcca 37883463  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  37883462 tcttcaacaaataccttcattcttcacttcacatcttttcttccattttcttc 37883410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 38679438 - 38679604
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| ||| |||||||||||||||   |||||||||| ||| ||||||||||||||||||  |||||||||||||||||||    
T  38679438 cggaaagattcagagccattaatgtggatttggacggttacaacaaccactaacacttttgcattgactgtattaatgacttaggacttgttttaggcta 38679537  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| ||||| |||||||| | ||| || |||||||||| |||||| ||||||||||| ||||||    
T  38679538 taaataggcttcaatcttcaacaaatatctacattcttcacttcacctcttttcttacattttcttc 38679604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 25977135 - 25977283
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||| ||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||| |||||||    
T  25977135 agagtcattaatgtaggtttggacgattacaaccactaacacgttttcattgactgtagtaatgacttaggacttgttttaggttataaataggcttcca 25977234  T
Q  485 tcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||    | ||||||||||||||| |||||| ||||||| ||| ||||||    
T  25977235 tcttca----acaccttcattcttcacttcacctcttttcttccattttcttc 25977283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 400 - 537
Target Start/End: Original strand, 9715327 - 9715464
Alignment:
Q  400 ggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacc 499  Q
    ||||||||||||||||||||| ||||||||||||||||||| | |||||| ||| ||||| ||||||||||||||||  ||||||||||||| | ||| |    
T  9715327 ggtttggacggttacaaccaccaacacgttttcattgactgcactaatgacctatgactttttttaggctataaatagacttccatcttcaacaaatagc 9715426  T
Q  500 ttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||||||| |||||| ||||||| ||| ||||||    
T  9715427 ttcattcttcacttcacctcttttcttccattttcttc 9715464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 11719938 - 11720091
Alignment:
Q  385 agagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttcca 484  Q
    |||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||  ||| ||    
T  11719938 agagccattaatgtaggtttgaacggttacgaccactaacacgttttcattgactgtactaatgacctaggacttattttaggccataaatagactttca 11720037  T
Q  485 tcttcaagatataccttcattc-ttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| | |||||||||||| ||||| |||||| ||||||| ||| ||||||    
T  11720038 tcttcaacaaataccttcattctttcacttcacctcttttctttcattttcttc 11720091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 376 - 537
Target Start/End: Original strand, 16513581 - 16513744
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggtt--acaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||| | ||| |||| ||| |   |||||||||||||||||||||| |||||||||||||| ||| |||||||||||  ||||||    
T  16513581 gaaagattcagagccattattgtggttttgtacgttacaacaaccactaacacgttttcatcgactgtattaatgacctatgacttgttttaaactataa 16513680  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| ||||| || ||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  16513681 ataggcttcaattttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 16513744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 374 - 476
Target Start/End: Original strand, 8299208 - 8299313
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||   ||| |||||||||| ||||||||||||||||| ||| || |||||||||||||    
T  8299208 cggaaagattcagagtcattaatttgggtttgaacggttacaacaaccaccaacacgtttttattgactgtattaatgacctaagaattgttttaggcta 8299307  T
Q  471 taaata 476  Q
    ||||||    
T  8299308 taaata 8299313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 15858880 - 15858804
Alignment:
Q  461 ttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||    
T  15858880 ttttaggctataaataggcttccatcttcaacaaataccttcattcttcacatcacctcttttcttacattttcttc 15858804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 537
Target Start/End: Complemental strand, 27495261 - 27495147
Alignment:
Q  423 acacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttt 522  Q
    |||||||||  ||||||||| | || | ||| |||| |||| ||||||||||||  ||| ||||||||| |  |  ||||||||||||| |||||| |||    
T  27495261 acacgttttagttgactgtaattattacctatgactggtttaaggctataaatagactttcatcttcaacaattttcttcattcttcacttcacctcttt 27495162  T
Q  523 tcttacatattcttc 537  Q
    |||||||| ||||||    
T  27495161 tcttacattttcttc 27495147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 528
Target Start/End: Complemental strand, 23252558 - 23252469
Alignment:
Q  439 tgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttac 528  Q
    |||| |||| || |||||||| |||||| |||||||||| ||| |||||| || | || |||||||||||||| | |||| |||||||||    
T  23252558 tgtaataattatttaggacttattttagactataaataaacttgcatcttaaacaaattccttcattcttcactttacctcttttcttac 23252469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 537
Target Start/End: Original strand, 2606076 - 2606140
Alignment:
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||| |||||||||||||| | ||||||||||||||||| |||| | ||||||| ||| ||||||    
T  2606076 aataggcttccatcttcaacaaataccttcattcttcacttcacatcttttcttccattttcttc 2606140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 8300864 - 8300922
Alignment:
Q  479 cttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||||||| | |||||| |||||||||| |||| | ||||||||||| ||||||    
T  8300864 cttccatcttcaacaaatacctacattcttcacttcacatcttttcttacattttcttc 8300922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 536
Target Start/End: Original strand, 27690482 - 27690584
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 533  Q
    ||||||||| | ||| |||||||||  ||| |||||||||||| |||| ||||||||| |  | | |||||||||||| || | | ||||||||||| ||    
T  27690482 ttgactgtagttatggtctaggactgatttaaggctataaatatgcttgcatcttcaacaatttcattcattcttcacttcccatcttttcttacatttt 27690581  T
Q  534 ctt 536  Q
    |||    
T  27690582 ctt 27690584  T

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Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 31722857 - 31723023
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaa---ccactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    ||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31722857 cggaaagattcagagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggcta 31722956  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| |||||||||||||| | | ||||||||||||||| ||| || ||||||||||| ||||||    
T  31722957 taaataggcttccatcttcaacaaagaccttcattcttcacttcatctcttttcttacattttcttc 31723023  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 386 - 537
Target Start/End: Complemental strand, 31318671 - 31318520
Alignment:
Q  386 gagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccat 485  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |||    
T  31318671 gagccattaatgtgggtttggacggttacaaccactaacacgttttcattgactgtagtaatgacctaggacttgttttaggctataaataggctttcat 31318572  T
Q  486 cttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  31318571 cttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 31318520  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 376 - 537
Target Start/End: Complemental strand, 31271496 - 31271335
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaat 475  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  31271496 gaaagattcagagccattaatgtgggtttggacgattacaaccacttacacgttttcattaactgtattaatgacctatgacttgttttaggctataaat 31271397  T
Q  476 aagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    | |||||||||||||| | |||| |||||| ||||| |||||| ||||||| ||| ||||||    
T  31271396 aggcttccatcttcaacaaatactttcatttttcacttcacctcttttcttccattttcttc 31271335  T

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Target: chr6; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 374 - 537
Target Start/End: Original strand, 9304942 - 9305105
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9304942 cggaaagattcagagccattattgtgggttttgacggttacaaccactaacacgttttcattgactgtattaatgacctaggacttgttttaggctataa 9305041  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| ||||  | ||| || | |||||||||||| |||| |||||| |||| || ||| ||||||    
T  9305042 ataggcttttaccttaaacaaataccttcattcatcacttcacctcttttattccattttcttc 9305105  T

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Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 377 - 537
Target Start/End: Complemental strand, 439180 - 439017
Alignment:
Q  377 aaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||| || ||||||| ||||||||||||||||||||   ||||||||||||||| |||||| || |||||| |||||||||||||||||||||||    
T  439180 aaagattcaaagtcattaatgtgggtttggacggttacaacaaccactaacacgttttcgttgactatactaatgacctaggacttgttttaggctataa 439081  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||  ||||||||||||| | ||||||||||||||||| |||||| ||||||||||| ||||||    
T  439080 atagacttccatcttcaacaaataccttcattcttcacttcacctcttttcttacattttcttc 439017  T

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Target: chr6; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 16395467 - 16395301
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaac---cactaacacgttttcattgactgtattaatgatctaggacttgttttaggcta 470  Q
    |||||| ||||| |||||||||| |||||||||| |||||||||   |||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  16395467 cggaaatattcaaagccattaatgtgggtttggatggttacaacaaccactaacacgttttcattgactatattaatgacataggacttgttttaggcta 16395368  T
Q  471 taaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||||| ||||||||| |||| | |||| |||||||||||| |||||| ||||||| ||| ||||||    
T  16395367 taaataggcttccatcgtcaacaaatactttcattcttcacttcacctcttttcttccattttcttc 16395301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 537
Target Start/End: Complemental strand, 303904 - 303740
Alignment:
Q  376 gaaagattcagagccattaatatgggtttggacggtta---caaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctata 472  Q
    |||| |||||||| ||||||| |  |||||||||||||   ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  303904 gaaacattcagagtcattaatgtaagtttggacggttataacaaccaccaacacgttttcattgattgtattaatgacctaggacttgttttaggctata 303805  T
Q  473 aataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    |||| |||||||| ||||| | ||||||||||||||||| |||||| ||||||| ||| ||||||    
T  303804 aataggcttccattttcaacaaataccttcattcttcacttcacctcttttcttccattttcttc 303740  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 402 - 537
Target Start/End: Complemental strand, 20818653 - 20818518
Alignment:
Q  402 tttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatatacctt 501  Q
    ||||||||||||  ||||| |||||||||||||||| |||| | ||||  || ||||| |||||| |||||||||  ||||||||||||| | || ||||    
T  20818653 tttggacggttagcaccacaaacacgttttcattgattgtacttatgacgtatgacttattttagactataaatatacttccatcttcaacaaattcctt 20818554  T
Q  502 cattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||| || |||||| ||||||||||| ||||||    
T  20818553 cattctttacttcacctcttttcttacattttcttc 20818518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 537
Target Start/End: Complemental strand, 17519942 - 17519839
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 533  Q
    ||||||||| | |||||||| |||||||||||||||||||||| | || ||| ||||||| || ||| |||||||||| ||| || ||| ||||| | ||    
T  17519942 ttgactgtagttatgatctatgacttgttttaggctataaatatgtttgcatgttcaagaaattcctccattcttcacttcatctctttccttacttttt 17519843  T
Q  534 cttc 537  Q
    ||||    
T  17519842 cttc 17519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 536
Target Start/End: Original strand, 6837248 - 6837350
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatatt 533  Q
    ||||||||| | |||||||||||||  ||| || ||||||||| |  |  |||||||| |  | |||||||||||||| |||||| ||||||||||| ||    
T  6837248 ttgactgtagttatgatctaggactgatttaagactataaatagggctggatcttcaataatttccttcattcttcacttcacctcttttcttacatttt 6837347  T
Q  534 ctt 536  Q
    |||    
T  6837348 ctt 6837350  T

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Target: scaffold1301 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 1804 - 1641
Alignment:
Q  374 cggaaagattcagagccattaatatgggtttggacggttacaaccactaacacgttttcattgactgtattaatgatctaggacttgttttaggctataa 473  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||  || | |||||||||| ||||||    
T  1804 cggaaagattcagagccattaatgtgggtttggacggttacaaccactaacttgttttcgttgactgtattaatgacttaaggcttgttttagactataa 1705  T
Q  474 ataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||| ||||||| |||||| | ||||||||||||||||  |||||| ||||| | ||| ||||||    
T  1704 ataggcttccaacttcaacaaataccttcattcttcagttcacctattttcctccattttcttc 1641  T

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Target: scaffold0054 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 430 - 537
Target Start/End: Original strand, 19067 - 19174
Alignment:
Q  430 ttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttaca 529  Q
    ||||||||||||| | |||| ||| |||||||||||||||||||||| |||  ||||||||| | || |||||||||||||| ||| || ||||||||||    
T  19067 ttcattgactgtacttatgacctaagacttgttttaggctataaataggctctcatcttcaacaaattccttcattcttcacttcaactcttttcttaca 19166  T
Q  530 tattcttc 537  Q
    | ||||||    
T  19167 ttttcttc 19174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 542
Target Start/End: Original strand, 17301 - 17397
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttcgacat 542  Q
    ||||||||||||||||||||||||||||||| | ||  |||||||| | || | |||||||||||| |||||| ||||||||| | |||||| ||||    
T  17301 atgatctaggacttgttttaggctataaataggtttgtatcttcaacaaattctttcattcttcacttcacctattttcttactttttcttcaacat 17397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 537
Target Start/End: Complemental strand, 51916 - 51827
Alignment:
Q  446 atgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacatattcttc 537  Q
    ||||||||||||||||||||||||||||||| | || ||||||||  | || ||||||||||| || |||||| ||||||||| | ||||||    
T  51916 atgatctaggacttgttttaggctataaataggtttgcatcttca--acattccttcattcttaacttcacctcttttcttactttttcttc 51827  T

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Target: scaffold0210 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 530
Target Start/End: Original strand, 8159 - 8255
Alignment:
Q  434 ttgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcaccttttttcttacat 530  Q
    |||| |||||| ||||||||||||| |||| ||||||||| || ||||  ||||| || |  | |||||||||||||| |||||| |||||||||||    
T  8159 ttgattgtatttatgatctaggactggtttaaggctataactaggcttggatctttaacaatttccttcattcttcacttcacctcttttcttacat 8255  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 528
Target Start/End: Original strand, 427220 - 427326
Alignment:
Q  422 aacacgttttcattgactgtattaatgatctaggacttgttttaggctataaataagcttccatcttcaagatataccttcattcttcacatcacctttt 521  Q
    ||||||||||  ||||||| | | ||||||||||| | || | |||||||||||| |||| ||||||||| |  | |||||||||||||| |||||| ||    
T  427220 aacacgttttatttgactgcacttatgatctaggaatggtctaaggctataaataggcttgcatcttcaacaatttccttcattcttcacttcacctctt 427319  T
Q  522 ttcttac 528  Q
    || ||||    
T  427320 ttgttac 427326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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