View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12969_high_2 (Length: 510)
Name: NF12969_high_2
Description: NF12969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12969_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 491
Target Start/End: Complemental strand, 37438771 - 37438301
Alignment:
| Q |
21 |
cactcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaagaaaat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37438771 |
cactcttttgaaggtgaaagaagaggattatacacttctacttgtatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaagaaaat |
37438672 |
T |
|
| Q |
121 |
atttcatttcttttggcattgcctaaaatgaaaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagccaaatatacgccgatgttaccnn |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37438671 |
atttcatttcttttggcattgcctaaaatgaaaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagcaaaatatacgccgatgttaccaa |
37438572 |
T |
|
| Q |
221 |
nnnnnnttctcaaatatcagcaataaacaatttgtgtatatatatgatactgttggatgttgtgttcatcatgatgttattttttaatagaagctaaaaa |
320 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |
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| T |
37438571 |
aagaaattctcaaatatcagcaataaacaatttatgtatatatatgatactgttggatgttgtgttcatcatgatgttgttttttaagagaagctaataa |
37438472 |
T |
|
| Q |
321 |
ataggaacaaatagatgattatttagtatctcaaacattgagtaagtaaaattgtccaacatgacttgttgtttctctagaatcaacttccaannnnnnn |
420 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37438471 |
ataggaacaaaaagatgattatttagtatcccaaacattgagtaagtaaaattgtccaacatgacttgttgtttctctaaaatcaacttccaattttttt |
37438372 |
T |
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| Q |
421 |
gttggtaaaactatatgacatagttgttccaaccagtgtcaaaaaggacaattggtttatcaagctatcac |
491 |
Q |
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| T |
37438371 |
gttggtaaaactatatgacatagttgtcccaaccagtgtcaaaaaggacaattggtttatcaagctatcac |
37438301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 478
Target Start/End: Original strand, 177640 - 178099
Alignment:
| Q |
24 |
tcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaagaaaata-- |
121 |
Q |
| |
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||||||||| | ||||||||||| ||||||| | | || |||||||||| | | |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
177640 |
tcttttgaatgggaaagaagaggcatatacacctctgctcatatcaattggacctatccaccataacaacaaaaaacttgaggaaatgcaagagcataaa |
177739 |
T |
|
| Q |
122 |
---------tttcatttcttttggcattgcctaaaatgaaaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagccaaatatacgccgat |
212 |
Q |
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|||||||| |||||| || || || || ||||| ||||||||| |||| |||| | ||| | |||||||||||| |||||| |||| | |
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| T |
177740 |
caaagatattttcattttttttggaatcgcatagaagaaaaaaatgatttaattaactacaaagctttcctagaacaagaagagaaaaatattcgccatt |
177839 |
T |
|
| Q |
213 |
gttaccnnnnnnnnttctcaaatatcagcaataaacaatttgtgtatatatatgatactgttggatgttgtgttcatcatgatgttattttttaatagaa |
312 |
Q |
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| T |
177840 |
gttaccaaaagaagtttcctgatatcagccatgaacaatttgttgacat----gatattgttggatgttgtgttcatcatggagct-gtttttaagagaa |
177934 |
T |
|
| Q |
313 |
gctaaaaaataggaacaaatagatgattatttagtatctcaaacattgagtaagtaaaattgtccaacatgacttgttgtttctctagaatcaacttcca |
412 |
Q |
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|||||||||| |||||| | |||||||||| ||||| ||| ||| ||| ||||||||| | | || |||||||||||| |||| ||||||| ||||| |
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| T |
177935 |
gctaaaaaatgggaacacaaagatgattatatagtaactc-aactttgtttaagtaaaaatattcagcatgacttgttgcttcttgagaatcagattcca |
178033 |
T |
|
| Q |
413 |
annnnnnngttggtaaaactatatgacatagttgttccaaccagtgtcaaaaaggacaattggttt |
478 |
Q |
| |
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| T |
178034 |
atttatgtgttggaaaaactatatgacacagttgttccaagcagtgacaaaaagcacaaatggttt |
178099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 487
Target Start/End: Original strand, 606328 - 606798
Alignment:
| Q |
22 |
actcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaagaaaata |
121 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||| | |||| |||||||||| | | |||||||||| |||||||| || |||||| || |||||| | | |
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| T |
606328 |
actcttttgaatgtgaaggaagaagattatacacctctactcatatcaattggacctatccaccatagcaacaaaacacatgaggatatgcaagaacaca |
606427 |
T |
|
| Q |
122 |
-----------tttcatttcttttggcattgcctaaaatgaaaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagccaaatatacgccg |
210 |
Q |
| |
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||||||||||||||| || ||||| | |||||||||||||||||||| |||||| ||| ||||||||||||| | ||||| |||| |
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| T |
606428 |
aacagagatattttcatttcttttggaatcgcctagaccaaaaaagtgatttaatgaactacaaaactttccttgaacaagaagaacataatattcgcca |
606527 |
T |
|
| Q |
211 |
atgttaccnnnnnnnnttctcaaatatcagcaataaacaatttgtgtatatatatgatactgttggatgttgtgttcatcatgatgttatttttta-ata |
309 |
Q |
| |
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||||||| || |||| ||| | ||||||||||| |||| |||||| ||||||| ||||||||||||| ||| ||| ||| | | |
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| T |
606528 |
ctgttaccagaaaatttttgttgatattagccagaaacaatttgttgatat----gatactattggatgctgtgttcatcatggagttgtttcttagaga |
606623 |
T |
|
| Q |
310 |
gaagctaaaaaataggaacaaatagatgattatttagtatctcaaacattgagtaagtaaaattgtccaacatgacttgttgtttctctagaatcaactt |
409 |
Q |
| |
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||| |||| || |||||| | ||||||||| ||||| ||||| ||||| ||||| |||| | |||||| || |||||| |||| ||||||| ||| |
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| T |
606624 |
gaaa--aaaagatgggaacacaaagatgattacatagtaactcaa-cattgtgtaagcaaaagtatccaacgggatttgttgcttcttgagaatcagctt |
606720 |
T |
|
| Q |
410 |
ccaannnnnnngttggtaaaactatatgacatagttgttccaaccagtgtcaaaaaggacaattggtttatcaagcta |
487 |
Q |
| |
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|||| ||| | |||| ||||||||| |||||||||| |||||||||||| ||||| |||||||||||||| |
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|
| T |
606721 |
ccaatctatgtgttagaaaaattatatgacacggttgttccaagcagtgtcaaaaaccacaatcggtttatcaagcta |
606798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 116149 - 116055
Alignment:
| Q |
22 |
actcttttgaaggtgaaagaagaggattatacacttatacttatatcaattgtatcaatccaccataacaacaaaaaacttgaggaaatacaaga |
116 |
Q |
| |
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||||||||||| |||||||| |||| |||||||| | || | ||||| |||| | | ||||||||||||||| ||| |||||||||||| ||||| |
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| T |
116149 |
actcttttgaatgtgaaagaggaggcttatacacctctaatcatatctattggacctatccaccataacaacgaaagacttgaggaaatgcaaga |
116055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 486
Target Start/End: Complemental strand, 115900 - 115680
Alignment:
| Q |
264 |
atgatactgttggatgttgtgttcatcatgatgttattttttaatagaagctaaaaaataggaacaaatagatgattatttagtatctcaaacattgagt |
363 |
Q |
| |
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|||||||| |||||| ||||||||||||| ||| ||| | || |||| |||||||| ||| || | |||||||||| || || ||||| | ||| || |
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| T |
115900 |
atgatactattggattctgtgttcatcatggagttgtttct-aagagaaaataaaaaatgggagcacaaagatgattatataataactcaa-ctttgtgt |
115803 |
T |
|
| Q |
364 |
aagtaaaattgtccaacatgacttgttgtttctctagaatcaacttccaannnnnnngttggtaaaactatatgacatagttgttccaaccagtgtcaaa |
463 |
Q |
| |
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|||||||| | |||| | || |||||| |||| ||||||| ||||||| ||||| |||||||||||||| | ||||||||| || |||||| |
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| T |
115802 |
aagtaaaagtatccagcgggatttgttgcttcttgagaatcagcttccaatttatgtgttggaaaaactatatgacacaattgttccaagcaaggtcaaa |
115703 |
T |
|
| Q |
464 |
aaggacaattggtttatcaagct |
486 |
Q |
| |
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||| ||||||||||| ||||||| |
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|
| T |
115702 |
aagcacaattggtttctcaagct |
115680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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