View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12969_low_1 (Length: 586)
Name: NF12969_low_1
Description: NF12969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12969_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 21 - 569
Target Start/End: Complemental strand, 30242774 - 30242226
Alignment:
| Q |
21 |
acatttttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaat |
120 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
30242774 |
acattctttaatgactatatgtctaagattttgtaagcaagccaagtgttttgggagacaactcagtttacgacaatgttttattttcaagatttccagc |
30242675 |
T |
|
| Q |
121 |
ttttgtaagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctgga |
220 |
Q |
| |
|
|||| || |||||||||||||| |||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30242674 |
ttttttaggttgtaaattgagtcaggcaaatttttgatgtcaagagaacgaagttccaaataccttaaatgaattaaactccctagtgatggcatccgga |
30242575 |
T |
|
| Q |
221 |
taaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattc |
320 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||| | || |||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
30242574 |
taaaggatgtgcataaaacccgaagagaaaggtatgttgggaagttatcatgtttttttttggcataataactcaactgaaacaatgttctcaaggattc |
30242475 |
T |
|
| Q |
321 |
aacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctcc |
420 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||| |||||| |
|
|
| T |
30242474 |
aacttttttgaaagcattcttatcaaaggataacaagtctttgtagtcaaaaccaatgtggtgtgtgctttttgacaaactggtcatgtttttgttctcc |
30242375 |
T |
|
| Q |
421 |
aaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaat |
520 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| | |
|
|
| T |
30242374 |
aaatacatacattctggccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccagaatattcatccattttgctgt |
30242275 |
T |
|
| Q |
521 |
cttgaaagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
||||||| || |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
30242274 |
cttgaaaaaatgatttttggtacaattccttccaaaccatgtttccaac |
30242226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 27 - 569
Target Start/End: Complemental strand, 30677564 - 30677022
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| || | || |||||| ||||| |||||||||||||||||||| |||| | |
|
|
| T |
30677564 |
ttcaatgactatatgtctaagattttgtaaacaagccaagcgttttggaagccagctaagtttatcacagtgttttattttcaagatttccagctttttt |
30677465 |
T |
|
| Q |
127 |
aagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaagg |
226 |
Q |
| |
|
| |||||||||||||| ||||||| | | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30677464 |
aggttgtaaattgagtcaggcaacatatttatgtcaagagaacgaagttccaaataccttaaatgaattaaactccctagtgatggcatccggataaagg |
30677365 |
T |
|
| Q |
227 |
atgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttt |
326 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| ||||| |||||| | ||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30677364 |
atgtgcataaaacccgaagagaaaggtatgttgggaagaaatcatgtttttttttggaataataactcaactgaaacaatgttctcaaggattcaacttt |
30677265 |
T |
|
| Q |
327 |
tttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctccaaacac |
426 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||| || |
|
|
| T |
30677264 |
tttgaaagcattcttatcaaaggataacaagtctttgaggtcaaaaccaatgtggtgtgtgctttttgacaaactggtcatgttttttttctccaaatac |
30677165 |
T |
|
| Q |
427 |
atacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaatcttgaa |
526 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||| || | |||||||| |
|
|
| T |
30677164 |
atacattctggccccattactaattgagcgagatcatggacaagatcatgcatcttaaaagaaatgtctccagaatattcatccatctttctatcttgaa |
30677065 |
T |
|
| Q |
527 |
agaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||| |||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
30677064 |
agaatgatttttggtacaattccttccaaaccgtgtttccaac |
30677022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 28 - 561
Target Start/End: Original strand, 30749351 - 30749887
Alignment:
| Q |
28 |
tcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgta |
127 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||| |||||||| |
|
|
| T |
30749351 |
tcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagtttacgacagcgttttattttcaagatttccagtttttgta |
30749450 |
T |
|
| Q |
128 |
agttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaagga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30749451 |
agttgtaaattgagttaggcaacttttttatatcaagagaacgaagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaagga |
30749550 |
T |
|
| Q |
228 |
tgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaact---caactgaaacaatgttcgcaaggattcaact |
324 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||| |||||||| || || ||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
30749551 |
tgtgcgtaaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgacaaaatactacacaactcaaaccatgttcgcaaggattcaact |
30749650 |
T |
|
| Q |
325 |
tttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctccaaac |
424 |
Q |
| |
|
|||||||||||| || ||||||||||| ||| ||| | ||||||| ||| |||||||||||||| |||||| ||||| |||| |||||||||| |
|
|
| T |
30749651 |
attttgaaagcatccttgtcgaaggataacgagtcgttattgtcaaaactaatatggtgtgtgcttttcgacaaactagtcaagtttgcattctccaaat |
30749750 |
T |
|
| Q |
425 |
acatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaatcttg |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||| || ||| || |||||| | |||||| |
|
|
| T |
30749751 |
acatacattcttgccccattactgattgagcaagatcatggacaagatcatgaatcttgaatgaaatgtcgccagaaaattcatccatttttctatcttg |
30749850 |
T |
|
| Q |
525 |
aaagaacgatttttgatagaattccttccaaaccatg |
561 |
Q |
| |
|
|||||| ||||||||||| ||||| | |||||||||| |
|
|
| T |
30749851 |
aaagaatgatttttgatacaattcatcccaaaccatg |
30749887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 27 - 561
Target Start/End: Original strand, 30060076 - 30060613
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
30060076 |
ttcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagtttacgacagtcttttattttcaagatttccagtttttgt |
30060175 |
T |
|
| Q |
127 |
aagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatct-ggataaag |
225 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||| |
|
|
| T |
30060176 |
aagttgtaaattgagtcaggcaacttttttatatcaagagaacgaagttccaaataccttaaatgaattaaactacctagtaatggc-tctcggataaag |
30060274 |
T |
|
| Q |
226 |
gatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaact---caactgaaacaatgttcgcaaggattcaa |
322 |
Q |
| |
|
| | ||| |||||||||||||||| ||| |||||||||||||||| |||||||| ||| ||| ||| |||| |||| |||||||||||||||||| |
|
|
| T |
30060275 |
gttatgcataaaacccgaagagaaaggtttgttgggaagtaatcatgtttttcttttgaaaaagtactacaaaactcaaaccatgttcgcaaggattcaa |
30060374 |
T |
|
| Q |
323 |
cttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctccaa |
422 |
Q |
| |
|
|| |||||||||||| || ||||||||||| ||| || | ||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
30060375 |
ctattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgacaaactagtcaagtttgcattctccaa |
30060474 |
T |
|
| Q |
423 |
acacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaatct |
522 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| || ||| || |||||| | |||| |
|
|
| T |
30060475 |
atacatacattcttgccccattactgattgagcaagatcatggacaaggtcatgcatcttgaatgaaatgtcgccagaaaattcatccatttttctatct |
30060574 |
T |
|
| Q |
523 |
tgaaagaacgatttttgatagaattccttccaaaccatg |
561 |
Q |
| |
|
|||||||| |||||||| || ||||| | ||| |||||| |
|
|
| T |
30060575 |
tgaaagaatgatttttggtacaattcatcccacaccatg |
30060613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 569
Target Start/End: Original strand, 29871887 - 29872426
Alignment:
| Q |
21 |
acatttttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaat |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| |||| || || | || |||||| ||||| |||||||||||||||||||| |
|
|
| T |
29871887 |
acattcttcaatgactatatgtctaagattttgtaaacaagccaagcgtttcggaagccagctaagtttatcacagtattttattttcaagatttccagc |
29871986 |
T |
|
| Q |
121 |
ttttgtaagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctgga |
220 |
Q |
| |
|
|||| || ||||||||||||| ||||||||||| |||||| ||| || |||| |||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
29871987 |
ttttttagattgtaaattgagtcaggcaacttttttatgtcaagaaaacgaagtcccaaataccttaaatgaattaaactccccagtgatggcatccgga |
29872086 |
T |
|
| Q |
221 |
taaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattc |
320 |
Q |
| |
|
||||||||| || ||||||||| |||||| | |||| |||||||| |||| |||||| | || || || |||||||| ||||||| ||||||||| |
|
|
| T |
29872087 |
taaaggatgcgcataaaacccggagagaaagatatgctgggaagttatcatgttttttttggtaagaataactcaac------aatgttctcaaggattc |
29872180 |
T |
|
| Q |
321 |
aacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctcc |
420 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| | |||| | |||| | |||||||||||||||||||||||||| | ||| ||||||| |||||| |
|
|
| T |
29872181 |
aacttttttgaaagcattttcatcaaaggataacactttgtag---tcaacaacaatgtggtgtgtgctttttgacaaactggtcatgtttttgttctcc |
29872277 |
T |
|
| Q |
421 |
aaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaat |
520 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| || |
|
|
| T |
29872278 |
aaatgcatacattcttgccccattattgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccagaatattcatccatcttgccat |
29872377 |
T |
|
| Q |
521 |
cttgaaagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
29872378 |
cttgaaagaatgatttttggtacaattccttccaaaccatgtttccaac |
29872426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 300 - 569
Target Start/End: Complemental strand, 30338645 - 30338376
Alignment:
| Q |
300 |
aaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaa |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30338645 |
aaacaaagttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaagttgttgctgtcaaaaccaatgtggtgtgtgctttttgacaaa |
30338546 |
T |
|
| Q |
400 |
ttagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30338545 |
ttagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccag |
30338446 |
T |
|
| Q |
500 |
aatatttatgcattttgcaatcttgaaagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||||| || ||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
30338445 |
aatattcatccatcttgctatcttgaaagaacgattttttgtacaattccttccaaaccatgtttccaac |
30338376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 27 - 569
Target Start/End: Original strand, 30435529 - 30436068
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||| || ||| | |||||||||||||||||||| ||||||| |
|
|
| T |
30435529 |
ttcaatgactatatgtctaagattttgtaagcaaaccaagcgttttgggagacaactcagttcacgacaatattttattttcaagatttccagtttttgt |
30435628 |
T |
|
| Q |
127 |
aagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaagg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||| || || ||| | || | | ||| |
|
|
| T |
30435629 |
aagttgtaaattgagttaggcaacttttttatatcaagagaacaaagttccaaataccttaaatgaattaaactccatactg--ggcct-tgtagagagg |
30435725 |
T |
|
| Q |
227 |
atgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttt |
326 |
Q |
| |
|
|||||| |||||| |||||||| || | |||||||| |||| |||||| | | |||| ||| | |||||||||||| |||||||||||||| |
|
|
| T |
30435726 |
atgtgcttaaaactcgaagagagctgtttaatgggaagtgatcatgtttttttggaatataattctccaagtcaaacaatgttcgtaaggattcaacttt |
30435825 |
T |
|
| Q |
327 |
tttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctccaaacac |
426 |
Q |
| |
|
|||||| ||| ||||||||| ||||| || || | | ||||| |||||||||||| |||||| |||||||||| ||||| |||||||||| || |
|
|
| T |
30435826 |
tttgaaggcaccctcatcgaatgataacaaattttcagagttaaaacttatgtggtgtgtgttttttgtcaaattagtcatgtttgcattctccaaatac |
30435925 |
T |
|
| Q |
427 |
atacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaatcttgaa |
526 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| |||||||| |
|
|
| T |
30435926 |
atacattctttccccgttactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccaaaatattcatccatcttgctatcttgaa |
30436025 |
T |
|
| Q |
527 |
agaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
30436026 |
agaatgatttttggtacaattccttccaaaccatttttccaac |
30436068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 300 - 569
Target Start/End: Original strand, 30483387 - 30483656
Alignment:
| Q |
300 |
aaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
30483387 |
aaacaatgttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaatttcttgctgttaaaaccaatgtggtgtgtgctttttgacaaa |
30483486 |
T |
|
| Q |
400 |
ttagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccat |
499 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30483487 |
ttagtcgtgtttttattctccaaacacgtacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccag |
30483586 |
T |
|
| Q |
500 |
aatatttatgcattttgcaatcttgaaagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||||| || ||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
30483587 |
aatattcatccatcttgctatcttgaaagaacgattttctgtacaattccttccaaaccatgtttccaac |
30483656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 27 - 561
Target Start/End: Original strand, 30399784 - 30400318
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||| ||||||||||| || |||||| || ||| | ||||||||||||| |||||| ||||||| |
|
|
| T |
30399784 |
ttcaataactatatgtctaagattttgtaagaaagccaagcgttttgggagacaaatcagttcaccacaatgttttattttcaaggtttccagtttttgt |
30399883 |
T |
|
| Q |
127 |
aagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaagg |
226 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| ||| ||| ||| |||||||||||||||||||||||||| |||||| ||||| | ||||||||| |
|
|
| T |
30399884 |
aagttgtaaattgagtcaggcaactcttgtatgtcaagataaagaagctccaaataccttaaatgaattaaactacctagtaatggcccccggataaagg |
30399983 |
T |
|
| Q |
227 |
atgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttt |
326 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||||||||||| ||| |||| | | ||| | |||| |||| |||||||||||||||||||||| |
|
|
| T |
30399984 |
ttgtgcataaaacccgaagagaagggtctgttgggaagtaatcctgttcttcttttggaaaagtagaaaactcaaaccatgttcgcaaggattcaacttt |
30400083 |
T |
|
| Q |
327 |
tttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctccaaacac |
426 |
Q |
| |
|
| |||| ||| ||||||||| ||||| || || | | ||||| |||||||||||||||||||||||| ||||| ||||| |||||||||| | |
|
|
| T |
30400084 |
tctgaaggcaccctcatcgaatgataacaaattatcagagttaaaacttatgtggtgtgtgctttttgacaaactagtcatgtttgcattctccaaatat |
30400183 |
T |
|
| Q |
427 |
atacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaatcttgaa |
526 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||| || ||| || |||||| ||||||| |
|
|
| T |
30400184 |
atacattcttgccccattactgacttagcgagatcatggacaagatcatgcatcttgaatgaaatgttgccagaaaattcatccatttttttgtcttgaa |
30400283 |
T |
|
| Q |
527 |
agaacgatttttgatagaattccttccaaaccatg |
561 |
Q |
| |
|
|||| |||||||| || ||||| | |||||||||| |
|
|
| T |
30400284 |
agaatgatttttggtacaattcatcccaaaccatg |
30400318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 569
Target Start/End: Complemental strand, 30713824 - 30713279
Alignment:
| Q |
21 |
acatttttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaat |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| |||| || || |||| |||||| |||||| |||||||||||||||||||| | |
|
|
| T |
30713824 |
acattcttcaatgactatatgtctaagattttgtaaacaagccaagcgtttcggaaggcaactaagtttattacagtgttttattttcaagatttccagt |
30713725 |
T |
|
| Q |
121 |
ttttgtaagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctgga |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| | |||||| || ||||||||||||||||||||||||||||| || || | | ||| | |
|
|
| T |
30713724 |
ttttgtaagttgtaaattgagtcaggcaacttttttatgccaagagaatgaatttccaaataccttaaatgaattaaactccatactg---ggacctgta |
30713628 |
T |
|
| Q |
221 |
taaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattc |
320 |
Q |
| |
|
||||||||||| |||||| |||||||| || | |||||||| |||| |||||| | |||| ||| | |||||||||||| |||||||| |
|
|
| T |
30713627 |
gaaaggatgtgcttaaaactcgaagagagctgtttaatgggaagtgatcatgtttttttgcaatataattctccaagtcaaacaatgttcgtaaggattc |
30713528 |
T |
|
| Q |
321 |
aacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctcc |
420 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||| || || | | ||||| |||||||||||| |||||| |||||||||| ||||| ||||||| |
|
|
| T |
30713527 |
aacttttttgaaggcaccctcatcgaatgataacaatttttcagagtgaaaacttatgtggtgtgtgttttttgtcaaattagtcatgtttgcattctcc |
30713428 |
T |
|
| Q |
421 |
aaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaat |
520 |
Q |
| |
|
||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||| || ||| ||||||| |
|
|
| T |
30713427 |
aaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaaaagaaatgtttccagaatattcatccatcttgcaat |
30713328 |
T |
|
| Q |
521 |
cttgaaagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||| ||||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
30713327 |
cttggaagaatgatttttggtacaattccttccaaaccatgtttccaac |
30713279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 97 - 561
Target Start/End: Original strand, 30206302 - 30206766
Alignment:
| Q |
97 |
tcttttattttcaagatttccaatttttgtaagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaatta |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
30206302 |
tcttttattttcaagatttccagtttttgtaagttgtaaattgagtccggcaacatttttatttcaagagaacgaagttccaaataccttaaatgaatta |
30206401 |
T |
|
| Q |
197 |
aactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaa |
296 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||||||||||| ||| ||| |||||| |||||||| ||||| | || ||| | |||| |
|
|
| T |
30206402 |
aactccctagtgatggtacctggataaaggatgtgcataaaacccgaagggaacggtttgttggcgagtaatcatgttttgttttggtgtaatgattcaa |
30206501 |
T |
|
| Q |
297 |
ctgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgac |
396 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| ||| ||| ||||| ||||| | || | | ||||| ||||||||||||||||||||| |
|
|
| T |
30206502 |
ctgaaacaatgttctcaaggattcaactttcctgaaggcaccctcgtcgaatgataacacgtcatcatagtgaaaacttatgtggtgtgtgctttttgac |
30206601 |
T |
|
| Q |
397 |
aaattagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctc |
496 |
Q |
| |
|
||| ||||| ||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30206602 |
aaagtagtcatgtttgaattctccaaatacatacattcttgacccattactgattgagcaagatcatggacaagatcatgcatcttgaaagaaatgtctc |
30206701 |
T |
|
| Q |
497 |
cataatatttatgcattttgcaatcttgaaagaacgatttttgatagaattccttccaaaccatg |
561 |
Q |
| |
|
|| || || | ||| ||| ||||||||||| |||||||| | ||||| |||||||||||| |
|
|
| T |
30206702 |
cagaaccgttgtccatcttgatgtcttgaaagaaagatttttggcacaattcattccaaaccatg |
30206766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 30483105 - 30483286
Alignment:
| Q |
21 |
acatttttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaat |
120 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||||| | |
|
|
| T |
30483105 |
acattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttgggagacaactcagattacgacagtcttttattttcaagatttccagt |
30483204 |
T |
|
| Q |
121 |
ttttgtaagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactcc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30483205 |
ttttgtaagttgtaaattgagttaggcaacttttctatgtcaagataaataagttccaaataccttaaatgaattaaactcc |
30483286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 301 - 569
Target Start/End: Original strand, 29853295 - 29853563
Alignment:
| Q |
301 |
aacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| ||||||||| ||||| || || | | | ||||| ||||||||||||||||||| |||| |
|
|
| T |
29853295 |
aacaatgttcgcaaggattcaacttttttaaaggcaccctcatcgaatgataacaaattatcggagttaaaacttatgtggtgtgtgctttttgtcaaac |
29853394 |
T |
|
| Q |
401 |
tagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccata |
500 |
Q |
| |
|
||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
29853395 |
tagtcatgtttgcattctccaaatacacacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaaaaatgtctccaga |
29853494 |
T |
|
| Q |
501 |
atatttatgcattttgcaatcttgaaagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||| || ||| ||| |||||||||||| || ||||| || ||||||||||||||||| |||||||| |
|
|
| T |
29853495 |
gtattcatccatcttgatatcttgaaagaatgacttttggtacaattccttccaaaccatatttccaac |
29853563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 30338927 - 30338746
Alignment:
| Q |
21 |
acatttttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaat |
120 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||| ||| ||||||||||| ||| |||||||||||||||||||| | |
|
|
| T |
30338927 |
acattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttggaagacaactcagtttatcacaacgttttattttcaagatttccagt |
30338828 |
T |
|
| Q |
121 |
ttttgtaagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactcc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
30338827 |
ttttgtaagttgtaaattgagttaggcaacttttctatgtcaagataagtaagttccaaataccttaaatgaattaaactcc |
30338746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 29853021 - 29853201
Alignment:
| Q |
30 |
aatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgtaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| || ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
29853021 |
aatgactatatgtctaagattttgtaagcaagccaagtgtttcgggagacaactcagttcaccgcagtcttttattttcaatatttccagtttttgtaag |
29853120 |
T |
|
| Q |
130 |
ttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgat |
210 |
Q |
| |
|
||||||||||||| |||||| ||| |||||| |||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29853121 |
ttgtaaattgagtccggcaacatttttatgtcaagagaacgaagttccaaataccttaaatgaattaaactttctagtgat |
29853201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 171 - 436
Target Start/End: Complemental strand, 17418412 - 17418150
Alignment:
| Q |
171 |
aagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatgtgcgtaaaacccgaagagaatggtatgttgggaagtaatca |
270 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||| || | ||||| | ||||||||| |||||||||||||||||||| | |||| |||| ||| |
|
|
| T |
17418412 |
aagttctaaataccataaatgaattaaactctctagtgagggtacctggagagaggatgtgcataaaacccgaagagaatggtttcttggcaagtggtca |
17418313 |
T |
|
| Q |
271 |
agtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaa |
370 |
Q |
| |
|
||||| || | || || || |||||||||||||||||||||||||||||||||||||| |||| ||||| || |||| ||| | | || |
|
|
| T |
17418312 |
tgttttggtctg--ttatgatct-aactgaaacaatgttcgcaaggattcaacttttttgaaggcatcctcattgagtgatagcgagtcatcagagtgaa |
17418216 |
T |
|
| Q |
371 |
aaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctccaaacacatacattctt |
436 |
Q |
| |
|
||| |||||||||||||||||||||||| || || ||||| |||||| ||| |||||||||||| |
|
|
| T |
17418215 |
aacatatgtggtgtgtgctttttgacaaaataatcatgtttgcattctctaaatacatacattctt |
17418150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 495
Target Start/End: Complemental strand, 30331252 - 30331059
Alignment:
| Q |
302 |
acaatgttcgcaaggattcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaatt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| ||||| || || ||| ||||||| ||||| || |||||||||| |||| | |
|
|
| T |
30331252 |
acaatgttcgcaaggattcaacttttttgaaggcaccgtcatcgattgataacaaattattggagtcaaaacttatgtgatgggtgctttttgtcaaact |
30331153 |
T |
|
| Q |
402 |
agtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtct |
495 |
Q |
| |
|
|||| ||||| |||||||| | ||||| ||| |||| ||| || ||||||||| ||||||| || ||||||| || |||| |||||||||||| |
|
|
| T |
30331152 |
agtcatgtttgcattctccagatacatatattgttgctccagtattgattgagcaagatcattgaaaagatcacgcgtctttaaagaaatgtct |
30331059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 413 - 497
Target Start/End: Original strand, 30475471 - 30475555
Alignment:
| Q |
413 |
tattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctcc |
497 |
Q |
| |
|
||||||||||| |||||| ||| |||||| ||||||||||| |||||||| || || |||||||||||||||| ||||||||| |
|
|
| T |
30475471 |
tattctccaaaatcatacactctgaccccataactgattgagcaagatcatgcactaggtcatgcatcttgaaagtaatgtctcc |
30475555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 30521601 - 30521551
Alignment:
| Q |
447 |
tgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctcc |
497 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
30521601 |
tgattgagcaagatcatggacaagatcatgcaacttgaaagaaatgcctcc |
30521551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 30561941 - 30561891
Alignment:
| Q |
447 |
tgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctcc |
497 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
30561941 |
tgattgagcaagatcatggacaagatcatgcaacttgaaagaaatgcctcc |
30561891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 491
Target Start/End: Original strand, 17983019 - 17983081
Alignment:
| Q |
429 |
acattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaat |
491 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
17983019 |
acattcatgccccgctactgattgagcaagatcatggacgagatcgtgcattttgaaagaaat |
17983081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 30521751 - 30521712
Alignment:
| Q |
297 |
ctgaaacaatgttcgcaaggattcaacttttttgaaagca |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
30521751 |
ctgaaacaatgttcgcaacgattcaacttttgtgaaagca |
30521712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 30562091 - 30562052
Alignment:
| Q |
297 |
ctgaaacaatgttcgcaaggattcaacttttttgaaagca |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
30562091 |
ctgaaacaatgttcgcaacgattcaacttttgtgaaagca |
30562052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 17982689 - 17982726
Alignment:
| Q |
105 |
tttcaagatttccaatttttgtaagttgtaaattgagt |
142 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
17982689 |
tttcaagatttccaatttttgtaagctataaattgagt |
17982726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 27 - 569
Target Start/End: Original strand, 26707051 - 26707587
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||| || ||| ||||||| ||| ||| |||||||||||||||||||||| ||||| | |
|
|
| T |
26707051 |
ttcaatgactatatgtctaagattttgtaaacaagtcaagtgtttaggaagacaactcagattatcacaatcttttattttcaagatttccagttttttt |
26707150 |
T |
|
| Q |
127 |
aagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaagg |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| || ||| || ||||||||||||||||||||||||||| |||||||||||| | |||| | |
|
|
| T |
26707151 |
aagttgtaaattgagttaggaaacttttttatatcaagataacgaagttccaaataccttaaatgaattaagctccctagtgataatacctgg------g |
26707244 |
T |
|
| Q |
227 |
atgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataagaactcaactgaaacaatgttcgcaaggattcaacttt |
326 |
Q |
| |
|
|||||| ||||||||||||||| ||| | |||||||| |||| | |||| | |||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
26707245 |
atgtgcataaaacccgaagagagcggtttaatgggaagtgatcatggttttttggggaataattcttcaagtcaaacaatgttcgcaaggattcaacttt |
26707344 |
T |
|
| Q |
327 |
tttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattctccaaacac |
426 |
Q |
| |
|
|||||| | ||||||||| |||||||| | | | | ||||| ||||||||||||||||||| |||| || || ||||| |||||||||| || |
|
|
| T |
26707345 |
tttgaagataccctcatcgaatgataaaaaagtatcggagttaaaacttatgtggtgtgtgctttttgtcaaactactcatgtttgcattctccaaatac |
26707444 |
T |
|
| Q |
427 |
atacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaatcttgaa |
526 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||| || || ||||||| |
|
|
| T |
26707445 |
atgcattcttgtcccattactgattgagcgagatcatggataagatcatgcatcttgaaagaaatgtctccagaatattcacccatcttacagtcttgaa |
26707544 |
T |
|
| Q |
527 |
agaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26707545 |
agaatgatttttggtacaattccttccaaaccatgtttccaac |
26707587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 27 - 569
Target Start/End: Complemental strand, 20296987 - 20296436
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||||| ||| |||| | ||||||||||| ||||||||||||| |
|
|
| T |
20296987 |
ttcaatgactatatgtctaagattttgtaggcaggccaagtgtttcggaagacaactcagattatcacagcgtattattttcaaggtttccaatttttgc |
20296888 |
T |
|
| Q |
127 |
aagttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaagg |
226 |
Q |
| |
|
|||||||||||||||| |||||||| || |||| | ||| | ||| ||||||||||||||||||||||||||| |||||||| ||| ||| |||||| |
|
|
| T |
20296887 |
aagttgtaaattgagtcaggcaactcttttatgacaagattacgaagctccaaataccttaaatgaattaaactctctagtgatcgcacatgggtaaagg |
20296788 |
T |
|
| Q |
227 |
atgtgcgtaaaacccgaagagaatggtatgttgggaagtaatcaagtttttctcgggaataa-ga--------actcaactgaaacaatgttcgcaagga |
317 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||||| ||||||| | | | | ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
20296787 |
atgtgcgcaaaacccgaagagaaaggtttgttgggatgtaatcatgatctattttggaataatgatgataatcactcaactgaaacaatgttcgcaagga |
20296688 |
T |
|
| Q |
318 |
ttcaacttttttgaaagcattctcatcgaaggataaaaagttgttgctatcaaaaccaatgtggtgtgtgctttttgacaaattagtcgtgtttttattc |
417 |
Q |
| |
|
|||||||| |||||| ||| || | || |||||| |||| || |||||||||||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
20296687 |
ttcaacttctttgaaggcacccttgttgatggataacaagtctgtgtagtcaaaaccaatgtggtgtgtgcttcgtgacaaattagtaacgtttttatcc |
20296588 |
T |
|
| Q |
418 |
tccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgc |
517 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||| ||| |||||||| ||||||||||||||||||||| |||| |||| | |||||| || |||||| |
|
|
| T |
20296587 |
tccaaatacatacattctttccccactactgaatgaaggagatcataaacaagatcatgcatcttgaaataaatatctctagaatattcatctattttga |
20296488 |
T |
|
| Q |
518 |
aatcttgaaagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
20296487 |
tttcttgaaagaatgatttttggtacaattccttccaaaccatgtttccaac |
20296436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 570
Target Start/End: Original strand, 52352049 - 52352211
Alignment:
| Q |
408 |
gtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatattta |
507 |
Q |
| |
|
|||| ||||||||| | |||||| ||| |||||| | ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| | | |
|
|
| T |
52352049 |
gtttgtattctccataatcatacactctggccccacaattgattgagcaagatcatgtacaagatcatgcatcttgaaagaaatgtctcctaaataatca |
52352148 |
T |
|
| Q |
508 |
tgcattttgcaatcttgaaagaacgatttttgatagaattccttccaaaccatgtttccaact |
570 |
Q |
| |
|
| || ||| ||||||||||| || ||||| || ||||| ||||||| ||| || |||||| |
|
|
| T |
52352149 |
ttgatcttgatgtcttgaaagaatgacttttggtacaattcattccaaatcatattgccaact |
52352211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 52351751 - 52351792
Alignment:
| Q |
105 |
tttcaagatttccaatttttgtaagttgtaaattgagttagg |
146 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
52351751 |
tttcaagatttccaatttatgcaagttgtaaatagagttagg |
52351792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 25294262 - 25294022
Alignment:
| Q |
30 |
aatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgtaag |
129 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| |||||||| ||| |||||||||| | | | ||||||||| |||||||||| | ||| |||| |
|
|
| T |
25294262 |
aatgattagatgtctaagattttgtaagcaagccaaatgttttggaagaccactcagtttatcataatattttatttttaagatttccagtatttttaag |
25294163 |
T |
|
| Q |
130 |
ttgtaaattgagttaggcaacttttctatgtcgagagaaataagttccaaataccttaaatgaattaaactccctagtgatggcatctggataaaggatg |
229 |
Q |
| |
|
||||||||||||| || |||| ||| |||||| |||||| |||| |||||||||||||||||||||| || |||| |||||| | ||||||||||||| |
|
|
| T |
25294162 |
ttgtaaattgagtcagacaacatttttatgtcaagagaataaagtgccaaataccttaaatgaattaagcttcctattgatggtacttggataaaggatg |
25294063 |
T |
|
| Q |
230 |
tgcgtaaaacccgaagagaatggtatgttgggaagtaatca |
270 |
Q |
| |
|
||| |||||| |||||| || ||| ||||| ||||| |||| |
|
|
| T |
25294062 |
tgcataaaactcgaagacaacggtttgttgagaagtgatca |
25294022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 8187165 - 8187203
Alignment:
| Q |
448 |
gattgagcgagatcatggacaagatcatgcatcttgaaa |
486 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
8187165 |
gattgagcaagatcatgtacaagatcatgcatcttgaaa |
8187203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 569
Target Start/End: Original strand, 7099530 - 7099673
Alignment:
| Q |
426 |
catacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccataatatttatgcattttgcaatcttga |
525 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||| ||| |||| | || ||| | | |||||| |
|
|
| T |
7099530 |
catacattcttgcccccctactgattgagcaagatcatggacgagatcatgcattttgaaagaaatcactcttgaataatcatccatatggatgtcttga |
7099629 |
T |
|
| Q |
526 |
aagaacgatttttgatagaattccttccaaaccatgtttccaac |
569 |
Q |
| |
|
||||| |||||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
7099630 |
aagaaagatttttggtacaattcattccaaatcatgtttccaac |
7099673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 7099131 - 7099250
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| |||||||| ||| ||| |||||||||| || || || | ||||||||||||||| ||||| |
|
|
| T |
7099131 |
ttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgt |
7099230 |
T |
|
| Q |
127 |
aagttgtaaattgagttagg |
146 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
7099231 |
aagttataaactgagttagg |
7099250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 496
Target Start/End: Complemental strand, 7581716 - 7581646
Alignment:
| Q |
426 |
catacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctc |
496 |
Q |
| |
|
||||||||||||| ||| ||||||| |||| |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
7581716 |
catacattcttgcaccactactgatcgagcaagatcatggatgagatcatgcattttgaaagaaatgtctc |
7581646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 7582115 - 7582000
Alignment:
| Q |
27 |
ttcaatgactatatgtctaagattttgtaggcaagccaagtgttttgggagataactcagtttactacagtcttttattttcaagatttccaatttttgt |
126 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||| || ||| ||||||| || | | ||||| | ||||||||||| ||| |||||| |
|
|
| T |
7582115 |
ttcaatgactaaatgtctaagattttgtaagcaagacaagtgttccggaagacaactcaggttggaaaaatctttcaatttcaagattttcaacttttgt |
7582016 |
T |
|
| Q |
127 |
aagttgtaaattgagt |
142 |
Q |
| |
|
||| | |||||||||| |
|
|
| T |
7582015 |
aagctataaattgagt |
7582000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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