View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_high_1 (Length: 679)
Name: NF1296_high_1
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 32521476 - 32521727
Alignment:
| Q |
14 |
ccttagccaaaccacaatggagaaggatgtgaaccgtcgtctccaccgcatcaccacaccactcacaaaagactgacgactagataggcaagacatccct |
113 |
Q |
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| T |
32521476 |
ccttagccaaaccacaatggagaaggatgtgaaccgtcgtctccactgcatcaccacaccactcacaaaagactgacgactcgataggcaagacatccct |
32521575 |
T |
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| Q |
114 |
aatccggagattatacttagaaggaatactatcatgaagggccttccatgaaaaacctataacttttaaccgtgccggattcttccaaatgctcccaaac |
213 |
Q |
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| T |
32521576 |
aatccggagattatacttagaaggaatactatcatgaagggccttccatgaaaaacctataacttttaaccgtgctggattcttccaaatgctcccaaac |
32521675 |
T |
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| Q |
214 |
actnnnnnnntcaatcaaatgatgcggcagatgaaggaacaagtaggaattt |
265 |
Q |
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| T |
32521676 |
actaaaaaaatcaatcaaatgatgcggcagatgaaggaacaagtagaaattt |
32521727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 430 - 650
Target Start/End: Original strand, 32521916 - 32522136
Alignment:
| Q |
430 |
catacaatttgaatagtggagatacaatcgtgcaatagaaaattgaactttctatagtccataacaatggcaagaccaggctccgctgtggctaaatggg |
529 |
Q |
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| T |
32521916 |
catacaatttgaatagtggagatacaatcgtgcaatagaaaattgaactttctatagtccataacaatggcaagaccaggctccactgtggctaaatggg |
32522015 |
T |
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| Q |
530 |
ccacaaacacctcagatcaagcaataaaccattctcaaactacaacatagtgttattaccagtgatacattgtatgaattaattaattatctatattata |
629 |
Q |
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| T |
32522016 |
ccacaaacacctcagatcaagcaataaaccattctcaaactacaacatagtgttattactagtgatacattgtatgaattaattaattatctatattata |
32522115 |
T |
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| Q |
630 |
tcaagacaaagacatagctcc |
650 |
Q |
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| T |
32522116 |
tcaagacaaagacatagctcc |
32522136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 259 - 374
Target Start/End: Complemental strand, 32521866 - 32521751
Alignment:
| Q |
259 |
ggaatttttatacatattcttctggtttattccattttagtgattgagtacttgatatcaatttcatacatggatacataatggaaatatattggttatt |
358 |
Q |
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| T |
32521866 |
ggaatttttatacatattcttctggtttattccattttagtgattgagtacttgatatcaatttcatacatgtatacataatagaaatatattggttatt |
32521767 |
T |
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| Q |
359 |
cttgttcctgcatctc |
374 |
Q |
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| T |
32521766 |
cttgttcctgcatctc |
32521751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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