View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1296_high_10 (Length: 342)

Name: NF1296_high_10
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1296_high_10
NF1296_high_10
[»] chr1 (1 HSPs)
chr1 (29-322)||(34832206-34832499)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 34832206 - 34832499
Alignment:
Q  29 attttggacagaaacattgttcccaaatttttcaagtgtagcaaaatcaagttatcggttatttgcagttgatttgctaggttttggaaagagtcctaag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832206 attttggacagaaacattgttcccaaatttttcaagtgtagcaaaatcaagttatcggttatttgcagttgatttgctaggttttggaaagagtcctaag 34832305  T
Q  129 ccaagtgaatctttgtacacattaagagaacacttagatatgattgagaaatctgttttggaggcccacaaagttaaatctttccacattgtggcccatt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832306 ccaagtgaatctttgtacacattaagagaacacttagatatgattgagaaatctgttttggaggcccacaaagttaaatctttccacattgtggcccatt 34832405  T
Q  229 ccttgggatcaattttagctctagcacttgcagctaaataccctcaatatgtcaagtctattaccttgcttgctccagtaagtcaaataattaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  34832406 ccttgggatcaattttagctctagcacttgcagctaaataccctcaatatgtcaagtctattaccctccttgctccggtaagtcaaataattaa 34832499  T

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