View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_high_15 (Length: 283)
Name: NF1296_high_15
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 26885786 - 26885967
Alignment:
| Q |
41 |
atcataggcacatacttctcccacatatgatccaccgtcatacaggtatacgataacctacgaagaagaataaaacatcatagtcatcttgactataatg |
140 |
Q |
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| T |
26885786 |
atcataggcacatacttctcctacatatgatccaccatcatacaggtatacgataacctacgaagaagaataaaacatcatagtcatcttgactatgatg |
26885885 |
T |
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| Q |
141 |
cagatgcaatgcctgcctaatcatcaagttataaataaacacgaaccaaccttaagactatctgccaaagtatcgtccagga |
222 |
Q |
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| T |
26885886 |
cagatgcaatgcctgcctaatcatcaatttataaataaacacgaaccaaccttaagactatctgccaaagtatcgtccagga |
26885967 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 26631583 - 26631508
Alignment:
| Q |
41 |
atcataggcacatacttctcccacatatgatccaccgtcatacaggtatacgataacctacgaagaagaataaaac |
116 |
Q |
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||||||||||| ||||| |||| | ||||||| ||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
26631583 |
atcataggcacgtacttgtccctcgtatgatcgaccgtcatacaggaatatcttaacctacaaagaagaataaaac |
26631508 |
T |
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