View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_high_21 (Length: 250)
Name: NF1296_high_21
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 54397217 - 54396977
Alignment:
| Q |
10 |
aaaagaaggcaaatccattggcatagacctaggcacaacctacagctgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggc |
109 |
Q |
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| T |
54397217 |
aaaagaaggcaaagccattggcatagacctaggcacaacctacagctgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggc |
54397118 |
T |
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| Q |
110 |
aaccgcacaacaccatcctacgtggcattcaccgataccgaacgactcatcggcgatgctgctaaggatcaagttgccatgaacccacggaacaccgtct |
209 |
Q |
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| T |
54397117 |
aaccgcacaacaccatcctacgtggcattcaccgataccgaacgactcatcggcgatgctgctaagaatcaagttgccatgaatccacagaacaccgtct |
54397018 |
T |
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| Q |
210 |
tcgatgctaagcgtttaattggtcgtagattctccgatgaa |
250 |
Q |
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| T |
54397017 |
tcgatgctaagcgtttaattggtcgtagattctccgatgaa |
54396977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 195
Target Start/End: Complemental strand, 39987092 - 39986953
Alignment:
| Q |
56 |
tgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggcaaccgcacaacaccatcctacgtggcattcaccgataccgaacgac |
155 |
Q |
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| T |
39987092 |
tgcgtcggtgtatggcaacatgaccgtgttgaaatcatcgccaacgaccaaggtaaccgtaccacgccgtcttacgtcgctttcaccgactccgagcgtc |
39986993 |
T |
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| Q |
156 |
tcatcggcgatgctgctaaggatcaagttgccatgaaccc |
195 |
Q |
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| T |
39986992 |
tcatcggtgatgctgctaagaatcaagttgccatgaaccc |
39986953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 17647455 - 17647640
Alignment:
| Q |
56 |
tgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggcaaccgcacaacaccatcctacgtggcattcaccgataccgaacgac |
155 |
Q |
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| T |
17647455 |
tgcgtcggtgtatggcaacatgaccatgttgaaatcatcgccaacgaccaatgtagcagaaccacaccgtcatacgttgcctttaccgactctgagagtc |
17647554 |
T |
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| Q |
156 |
tcatcggcgatgctgctaaggatcaagttgccatgaacccacggaacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
241 |
Q |
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| T |
17647555 |
tcatcggtgatgccgctaagaatcaagtcgccaggaaccctatcaacaccatcttcgatgctaagaggttgattggtcgtagattc |
17647640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 17666109 - 17666294
Alignment:
| Q |
56 |
tgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggcaaccgcacaacaccatcctacgtggcattcaccgataccgaacgac |
155 |
Q |
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| T |
17666109 |
tgcgtcggtgtatggaaacatgaccgtgttgaaatcatcgccaacgaccaaggtaacagaaccacaccgtcttacgtcgcctttaccgactcagagcgtc |
17666208 |
T |
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| Q |
156 |
tcatcggcgatgctgctaaggatcaagttgccatgaacccacggaacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
241 |
Q |
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| T |
17666209 |
tcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcgatgctaagaggttgattggccgtagattc |
17666294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 17716113 - 17716298
Alignment:
| Q |
56 |
tgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggcaaccgcacaacaccatcctacgtggcattcaccgataccgaacgac |
155 |
Q |
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| T |
17716113 |
tgcgtaggtgtatggcaacatgaccgtgttgaaatcatcgccaacgaccaaggtaacagaactacaccatcttacgttgcctttaccgactccgagcatc |
17716212 |
T |
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| Q |
156 |
tcatcggcgatgctgctaaggatcaagttgccatgaacccacggaacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
241 |
Q |
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| T |
17716213 |
tcatcggtgatgccgctctgaatcaagtctcctcgaaccctatcaacaccgtcttcgatgctaagaggttgattggccgtagattc |
17716298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 17621371 - 17621556
Alignment:
| Q |
56 |
tgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggcaaccgcacaacaccatcctacgtggcattcaccgataccgaacgac |
155 |
Q |
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| T |
17621371 |
tgcgtaggtgtatgtcaacatgaccgtgttgaaatcatcgccaacaaccaaggtaacagaaccacaccatcttacgttgcctttaccgactctgactgtc |
17621470 |
T |
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| Q |
156 |
tcatcggcgatgctgctaaggatcaagttgccatgaacccacggaacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
241 |
Q |
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|||| || ||| |||||||| ||||||||||| |||||| ||||||||||| ||||||||| | || ||||| ||||||||| |
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| T |
17621471 |
tcattggtgatactgctaagaatcaagttgcctcgaaccctatcaacaccgtctttgatgctaagaggttgattggccgtagattc |
17621556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 17703469 - 17703654
Alignment:
| Q |
56 |
tgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggcaaccgcacaacaccatcctacgtggcattcaccgataccgaacgac |
155 |
Q |
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||||| |||||||||||| | ||||| || | |||||| | ||||||||||||||| | || ||| | || ||||| || || || || |||| | | |
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| T |
17703469 |
tgcgtaggtgtatggcaacatgaccgtgttcacatcatcgccaacgaccaaggcaacagaaccacatcgtcttacgtcgcctttactgactccgagtgtc |
17703568 |
T |
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| Q |
156 |
tcatcggcgatgctgctaaggatcaagttgccatgaacccacggaacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
241 |
Q |
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||||||| ||||| |||||| ||||||| || |||||| ||||||||||||||||||||| | || ||||||||||||||| |
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| T |
17703569 |
tcatcggtgatgccgctaagaatcaagtctcctcgaaccctatcaacaccgtcttcgatgctaagaggttgattggtcgtagattc |
17703654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 17717374 - 17717559
Alignment:
| Q |
56 |
tgcgtcggtgtatggcaaaacgaccgcgtcgaaatcatccctaacgaccaaggcaaccgcacaacaccatcctacgtggcattcaccgataccgaacgac |
155 |
Q |
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| T |
17717374 |
tgcgtaggtgtatggcaacatgaccatgttgaaatcatcaccaatgaccaaggtaacagaaccactccgtcttacgtcgcctttaccgactccgagcatc |
17717473 |
T |
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| Q |
156 |
tcatcggcgatgctgctaaggatcaagttgccatgaacccacggaacaccgtcttcgatgctaagcgtttaattggtcgtagattc |
241 |
Q |
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||||||| ||||| |||| | ||||||| ||| |||||| ||||||||||||||||||||| | || ||||| ||||||||| |
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| T |
17717474 |
tcatcggtgatgccgctatgaatcaagtcgcctcgaaccctatcaacaccgtcttcgatgctaagaggttgattggccgtagattc |
17717559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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