View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1296_high_8 (Length: 374)
Name: NF1296_high_8
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_high_8 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 923065 - 923397
Alignment:
| Q |
30 |
ctgtgaaacttcaccaagactctgaaaaacgtttggtgatattgcaagctacagaagaatggtcggaaaattattgaatctcacaacaagcagaccagac |
129 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
923065 |
ctgtgaaacttcaccaagactctaaaaatcgtttggtgatattgcaagctacaaaagaatggtcggaaaattattgaatctcacaacaagcagaccagac |
923164 |
T |
|
| Q |
130 |
atagcttttgtaacacaacaattaagtcaatttcttactacatcaacaatcattcattatgaaacatcttgcagagtttgcaggagatttattcttttta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
923165 |
atagcttttgtaacacaacaattaagtcaatttcttactacatcaacaatcattcattatgaaacatcttgcagaatttgctggagatttattcttttta |
923264 |
T |
|
| Q |
230 |
tttatataataattatttgtcattnnnnnnnnnntcttataaagttgtgaagtatctcaaagggtcacctagaagaggttttttattttgaagggatttc |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
923265 |
tttatataataattatttgtcattaaaaaaaaaaacttatagagttgtgaagtatctcaaagggtcacctaaaagaggttttttattttgaagggatttc |
923364 |
T |
|
| Q |
330 |
acatccctaacttattggattattgcatatatt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
923365 |
acatccctaacttattggattattgcatatatt |
923397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 13989690 - 13989778
Alignment:
| Q |
76 |
agctacagaagaatggtcggaaaattattgaatctcacaacaagcagaccagacatagcttttgtaacacaacaattaagtcaatttct |
164 |
Q |
| |
|
||||| |||||| | || |||||| | ||| ||||||| |||| ||||||||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
13989690 |
agctatagaagacttgtgggaaaactcttgtatctcaccacaaccagaccagacatatcttttgtaactcaacaactaagtcaatttct |
13989778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 26135152 - 26135283
Alignment:
| Q |
76 |
agctacagaagaatggtcggaaaattattgaatctcacaacaagcagaccagacatagcttttgtaacacaacaattaagtcaatttcttactacatcaa |
175 |
Q |
| |
|
||||| |||||| | || |||||| | ||| ||||||| |||| |||||||||||||||||||||||| |||||| ||||||||||||| | || ||| |
|
|
| T |
26135152 |
agctatagaagacttgtgggaaaactcttgtatctcaccacaaccagaccagacatagcttttgtaactcaacaactaagtcaatttctatcaactccaa |
26135251 |
T |
|
| Q |
176 |
caatcattcattatgaaacatcttgcagagtt |
207 |
Q |
| |
|
| || | |||||||||| || ||||||||||| |
|
|
| T |
26135252 |
ccattactcattatgaagcagcttgcagagtt |
26135283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 94227 - 94139
Alignment:
| Q |
76 |
agctacagaagaatggtcggaaaattattgaatctcacaacaagcagaccagacatagcttttgtaacacaacaattaagtcaatttct |
164 |
Q |
| |
|
||||| |||||| | || |||||| | ||| ||||||| |||| ||||||||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
94227 |
agctatagaagacttgtgggaaaactcttgtatctcaccacaaccagaccagacatatcttttgtaactcaacaactaagtcaatttct |
94139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 31193573 - 31193485
Alignment:
| Q |
76 |
agctacagaagaatggtcggaaaattattgaatctcacaacaagcagaccagacatagcttttgtaacacaacaattaagtcaatttct |
164 |
Q |
| |
|
||||| |||||| | || |||||| | ||| ||||||| |||| ||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
31193573 |
agctatagaagacttgtgggaaaactcttgtatctcaccacaaccagaccagacatagcctttgtaactcaacaactaagtcaatttct |
31193485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 52774740 - 52774828
Alignment:
| Q |
76 |
agctacagaagaatggtcggaaaattattgaatctcacaacaagcagaccagacatagcttttgtaacacaacaattaagtcaatttct |
164 |
Q |
| |
|
||||| |||||| | || |||||| | ||| ||||||| |||| ||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
52774740 |
agctatagaagacttgtgggaaaactcttgtatctcaccacaaccagaccagacatagcctttgtaactcaacaactaagtcaatttct |
52774828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 16258248 - 16258318
Alignment:
| Q |
94 |
ggaaaattattgaatctcacaacaagcagaccagacatagcttttgtaacacaacaattaagtcaatttct |
164 |
Q |
| |
|
|||||| | ||| ||||||| |||| ||||||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
16258248 |
ggaaaactcttgtatctcaccacaaccagaccaaacatagcttttgtaactcaacaactaagtcaatttct |
16258318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 21033622 - 21033663
Alignment:
| Q |
212 |
ggagatttattctttttatttatataataattatttgtcatt |
253 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
21033622 |
ggagatttattctttttatttttataatatatatttgtcatt |
21033663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University