View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1296_low_1 (Length: 1232)

Name: NF1296_low_1
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1296_low_1
NF1296_low_1
[»] chr1 (13 HSPs)
chr1 (80-611)||(33861425-33861965)
chr1 (80-611)||(33918957-33919497)
chr1 (614-1188)||(29254870-29255464)
chr1 (651-1188)||(13263774-13264321)
chr1 (637-767)||(9981375-9981505)
chr1 (620-782)||(29254657-29254820)
chr1 (614-741)||(17238399-17238527)
chr1 (614-741)||(6632008-6632136)
chr1 (614-727)||(6631316-6631429)
chr1 (614-740)||(17237705-17237832)
chr1 (682-782)||(13264371-13264472)
chr1 (611-662)||(19990273-19990324)
chr1 (611-662)||(47966992-47967043)
[»] chr4 (3 HSPs)
chr4 (658-1184)||(32526833-32527376)
chr4 (609-759)||(32527453-32527604)
chr4 (610-656)||(27110485-27110531)
[»] chr2 (8 HSPs)
chr2 (612-1146)||(30617392-30617946)
chr2 (614-727)||(41320009-41320122)
chr2 (618-740)||(13545291-13545414)
chr2 (614-778)||(13544598-13544762)
chr2 (614-741)||(41320703-41320831)
chr2 (622-689)||(11169280-11169347)
chr2 (608-688)||(8143321-8143402)
chr2 (614-691)||(15555016-15555093)
[»] chr3 (3 HSPs)
chr3 (614-727)||(52362640-52362753)
chr3 (614-718)||(16674246-16674350)
chr3 (639-741)||(16673555-16673658)
[»] chr5 (3 HSPs)
chr5 (610-741)||(41516456-41516588)
chr5 (614-662)||(8469813-8469861)
chr5 (677-740)||(41517157-41517221)
[»] chr6 (4 HSPs)
chr6 (631-773)||(14125165-14125308)
chr6 (1073-1159)||(14125355-14125439)
chr6 (859-910)||(14125605-14125656)
chr6 (610-656)||(2479292-2479338)


Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 80 - 611
Target Start/End: Complemental strand, 33861965 - 33861425
Alignment:
Q  80 ctccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatct 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  33861965 ctccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatct 33861867  T
Q  180 tttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttct 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861866 tttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttct 33861767  T
Q  280 caatgtaatttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttc 379  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861766 caatgtaattgcgttgagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttc 33861668  T
Q  380 ttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag---------- 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||              
T  33861667 ttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtt 33861568  T
Q  470 -aagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaatt 568  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33861567 taagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaatt 33861468  T
Q  569 aatattattattcgaaccgcttactacatgtatattctaaaaa 611  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  33861467 aatattagtattcgaaccgcttactacatgtatattctaaaaa 33861425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 80 - 611
Target Start/End: Original strand, 33918957 - 33919497
Alignment:
Q  80 ctccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatct 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  33918957 ctccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatct 33919055  T
Q  180 tttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttct 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919056 tttcacttgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttct 33919155  T
Q  280 caatgtaatttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttc 379  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919156 caatgtaattgcgttgagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttc 33919254  T
Q  380 ttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag---------- 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||              
T  33919255 ttcattgcaaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtt 33919354  T
Q  470 -aagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaatt 568  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33919355 taagtggtctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaatt 33919454  T
Q  569 aatattattattcgaaccgcttactacatgtatattctaaaaa 611  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  33919455 aatattagtattcgaaccgcttactacatgtatattctaaaaa 33919497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 614 - 1188
Target Start/End: Complemental strand, 29255464 - 29254870
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    ||||||||||||| |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29255464 ggagggatatattgactctaagagtaagtttctagacttacaccaaatcacaacctttcattgtattttaatctaatggcttgaatgatagttttaaatg 29255365  T
Q  714 ttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactc 813  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29255364 ttaatcatatgacctctttttggatctccatccaaataaagacattctccaattattctcccttaattaaacaaaaatctcgttcctcttaaactcactc 29255265  T
Q  814 ttaaatgtgtttgtttttaatttcagttaaaataac-aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata-- 910  Q
    ||||||||||| |||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  29255264 ttaaatgtgttcgtttttaatttcagttaaaataacaaaaaattttaactccattatataagtaactcgcccaattgaatttgtatataccatccatatt 29255165  T
Q  911 --nnnnnnnngagggaatataccatccatatttcttttgattg------gatcatgacaggagttagaatggtgggtttaccttgcactccacagcctcg 1002  Q
               ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29255164 tttttttttttagggaatataccatccatatttcttttgattggatattgatcatgacaggagttagaatggtaggtttaccttccactccacagcctcg 29255065  T
Q  1003 tctctacatgctcccattctctgccattggttttatgtattaatatttctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagca--- 1099  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       
T  29255064 tctctacatgctcccattctctgtcattggttttatgtattaatatttctttcttttttggataaccagtggtgctttgcaatcgaagttgaaagcaata 29254965  T
Q  1100 ------atataatttgtagaatttataatgcaaccttatgataatattcgaagaaaagactgaaaacacttattgaattgggagaggtatttatg 1188  Q
          |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  29254964 taatttatataatttgtagaatttgtaatgcaaccttatgataatattcgaagaaaagactgaaaaaactttttgaattgggagacgtatttatg 29254870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 651 - 1188
Target Start/End: Original strand, 13263774 - 13264321
Alignment:
Q  651 ttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaat 750  Q
    |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13263774 ttactccaaatcacaacctttcattgtattttaatctaacggttcgaatgatagttttaaatgttaatcatgtgacctctttttg-atctccatccaaat 13263872  T
Q  751 aaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataaca 850  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13263873 aaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaataaca 13263972  T
Q  851 annnnnnn-aactccattatataagtaactcgcccaattgaatttgtatataccatccatannnnnnnn----gagggaatataccatccatatttcttt 945  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||| ||||||||||||    
T  13263973 aatttttttaactccattatataagtaactcgcccaattgaatttgtatataccatccatattttttttttttgagggaatataccaaccatatttcttt 13264072  T
Q  946 tgattggat------catgacaggagttagaatggtgggtttaccttgcactccacagcctcgtctctacatgctcccattctctgccattggttttatg 1039  Q
    |||||||||      ||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||     
T  13264073 tgattggatattgatcatgacaggagttagaatggtaggtttaccttccattccacagcctcgtctctacatgctcccattctctaccattggttttata 13264172  T
Q  1040 tattaatatttctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagcaatataatttgtagaatttataatgcaaccttatgataata 1139  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||    
T  13264173 tattaatatttctttcttttttggataaccagtggtgctttgcaatcgaagttgaaagcaaaataatttatataatttgtaatgcaaccttatgataata 13264272  T
Q  1140 ttcgaagaaaagactgaaaacacttattgaattgggagaggtatttatg 1188  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  13264273 ttcgaagaaaagacggaaaacactttttgaattgggagaggtatttatg 13264321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 637 - 767
Target Start/End: Complemental strand, 9981505 - 9981375
Alignment:
Q  637 gtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttgg 736  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  9981505 gtaagtttgtagacttactccaaatcacaacctttcattgtattttaatctaacgacttgaatgataattttaaatgttaaacatgtgacctctttttgg 9981406  T
Q  737 atctccatccaaataaaaactttctccaatt 767  Q
    ||||||||||  ||||| |||||||||||||    
T  9981405 atctccatcctgataaagactttctccaatt 9981375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 620 - 782
Target Start/End: Original strand, 29254657 - 29254820
Alignment:
Q  620 atatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatc 719  Q
    |||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  29254657 atattttaactccaagagtaagtttgtagacttactccaaatcataacctttcattatattttaatctaacggcttgaatgatagtcttaattgttaatc 29254756  T
Q  720 atgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaatta 782  Q
    |||||| |||||||||| |||||| |||  ||||| ||||||||  |||||||||  |||||||    
T  29254757 atgtgaccctctttttgaatctccttcctcataaatactttctctgattattctcttttaatta 29254820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 614 - 741
Target Start/End: Complemental strand, 17238527 - 17238399
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17238527 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17238428  T
Q  714 ttaatcatgtgacc-tctttttggatctc 741  Q
    |||||||||||||| ||||||||||||||    
T  17238427 ttaatcatgtgaccatctttttggatctc 17238399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 614 - 741
Target Start/End: Complemental strand, 6632136 - 6632008
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||||||||| |  ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  6632136 ggagggatatttagactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 6632037  T
Q  714 ttaatcatgtgacc-tctttttggatctc 741  Q
    |||||||||||||| ||||||||||||||    
T  6632036 ttaatcatgtgaccatctttttggatctc 6632008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 614 - 727
Target Start/End: Original strand, 6631316 - 6631429
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||||||||| || |||||||| |||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  6631316 ggagggatattttgactccaagggtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 6631415  T
Q  714 ttaatcatgtgacc 727  Q
    ||||||||||||||    
T  6631416 ttaatcatgtgacc 6631429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 614 - 740
Target Start/End: Original strand, 17237705 - 17237832
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||||||||| || ||| ||||||||||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17237705 ggagggatattttgactgcaagagtaagtttatagacttactccaaatatccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17237804  T
Q  714 ttaatcatgtgacc-tctttttggatct 740  Q
    |||||||||||||| ||||| |||||||    
T  17237805 ttaatcatgtgaccatctttgtggatct 17237832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 682 - 782
Target Start/End: Complemental strand, 13264472 - 13264371
Alignment:
Q  682 taatctaacggcttgaatgatagttttaaatgttaatcatgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaat 780  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| |||  ||||| ||||| ||  |||||||||  |||||    
T  13264472 taatctaacggcttgaatgatagtcttaattgttaatcatgtgaccctctttttgaatctccttcctcataaatactttatctgattattctcttttaat 13264373  T
Q  781 ta 782  Q
    ||    
T  13264372 ta 13264371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 611 - 662
Target Start/End: Original strand, 19990273 - 19990324
Alignment:
Q  611 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 662  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||| |||||    
T  19990273 aggggagggatatattgactccaagagtaagtctaaagacttactccaaatc 19990324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 611 - 662
Target Start/End: Original strand, 47966992 - 47967043
Alignment:
Q  611 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 662  Q
    |||||||||||||||| ||||||||||||||| |||| | |||||| |||||    
T  47966992 aggggagggatatattgactccaagagtaagtgtttaaagttactccaaatc 47967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 658 - 1184
Target Start/End: Original strand, 32526833 - 32527376
Alignment:
Q  658 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaaaact 757  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32526833 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaagact 32526932  T
Q  758 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataac--aannnn 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  ||        
T  32526933 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgttttttatttcagttaaaataacaaaaaaaa 32527032  T
Q  856 nnnaactccattatataagtaactcgcccaattgaatttgtatataccatccatannnnnnnngagggaatataccatccatatttcttttgattgg--- 952  Q
       |||||||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||||||||||       
T  32527033 tttaactccattatataagtaactcgcccaattgaatttctatataccatccatatttttttttagggaatataccatccatatttcttttgattggata 32527132  T
Q  953 ---atcatgacaggagttagaatggtgggtttaccttgcactccacagcctcgtctctacatgctcccattctctgccattggttttatgtattaatatt 1049  Q
       ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527133 ttaatcatgacaagagttagaatggtaggtttaccttccactccacagcctcgtctctacatgctcccattctctgccattggttttatgtattaatatt 32527232  T
Q  1050 tctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagca---------atataatttgtagaatttataatgcaaccttatgataatat 1140  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||||||    
T  32527233 tctttcttttttggataaccagtggtgctttgcaatcgaagttgaaagcaatataatttatataatttgtagaatttgtaatgcaaccttatgataatat 32527332  T
Q  1141 tcgaagaaaagactgaaaacacttattgaattgggagaggtatt 1184  Q
    || || |||||||||||||||||| |||||||||||| ||||||    
T  32527333 tcaaaaaaaagactgaaaacactttttgaattgggaggggtatt 32527376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 609 - 759
Target Start/End: Complemental strand, 32527604 - 32527453
Alignment:
Q  609 aaaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttt 708  Q
    ||||||||| ||||| || |||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||    
T  32527604 aaaggggagagatattttgactctaagagtaagtttgtagacttactccaaatcacaacctttcattatattttaatctaacagcttgaatgatagtctt 32527505  T
Q  709 aaatgttaatcatgtga-cctctttttggatctccatccaaataaaaacttt 759  Q
    || |||||||||||||| |||||||||| |||||| |||  ||||| |||||    
T  32527504 aattgttaatcatgtgaccctctttttgaatctccttcctcataaatacttt 32527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 610 - 656
Target Start/End: Complemental strand, 27110531 - 27110485
Alignment:
Q  610 aaggggagggatatattaactccaagagtaagtttttagacttactc 656  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  27110531 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 27110485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 612 - 1146
Target Start/End: Original strand, 30617392 - 30617946
Alignment:
Q  612 ggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaa 711  Q
    ||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30617392 ggggagggatatattgactcaaaaagtaagtttctagacttactctaaatcacaacctttcattgtattttaatctaacagcttgaatgatagttttaaa 30617491  T
Q  712 tgttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 811  Q
    | |||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30617492 tattaaccatgtgacctctttttggatctccatccacacaaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 30617591  T
Q  812 tcttaaatgtgtttgtttttaatttcagttaaaataacaa---nnnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatcca 908  Q
    ||||||||||||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30617592 tcttaaatgtgttcgtttttaatttcagttaaaataacaaatttttttttaactccattatataagtaactcgcccaattgaattggtatataccatcca 30617691  T
Q  909 ta--nnnnnnnngagggaatataccatccatatttcttttgattg------gatcatgacaggagttagaatggtgggtttaccttgcactccacagcct 1000  Q
    ||          |||||||||||||||||||||||||||||||||      |||||||| ||||||||||||||| |||||||||| ||||||| | |||    
T  30617692 tattttttttttgagggaatataccatccatatttcttttgattggatattgatcatgagaggagttagaatggtaggtttaccttccactccataacct 30617791  T
Q  1001 cgtctctacatgctcccattctctgccattggttttatgtattaatatttctttcttttttggataaccagtagtgctttgcaatcgaagttgaaagca- 1099  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |     
T  30617792 cgtctctacatgttcccattctctgtcattggttttatgtattaatatttatttcttttttggataaccagtggtgctttgcaatcgaagttgaaaggaa 30617891  T
Q  1100 --------atataatttgtagaatttataatgcaaccttatgataatattcgaag 1146  Q
            |||||||||||||||||| ||||||||||||||||||||||||||||    
T  30617892 tataatttatataatttgtagaatttgtaatgcaaccttatgataatattcgaag 30617946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 614 - 727
Target Start/End: Original strand, 41320009 - 41320122
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  41320009 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 41320108  T
Q  714 ttaatcatgtgacc 727  Q
    ||||||||||||||    
T  41320109 ttaatcatgtgacc 41320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 618 - 740
Target Start/End: Complemental strand, 13545414 - 13545291
Alignment:
Q  618 ggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaa 717  Q
    |||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||   ||||||| ||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgggttttaattgttaa 13545315  T
Q  718 tcatgtgacc-tctttttggatct 740  Q
    |||| ||||| ||||| |||||||    
T  13545314 tcatatgaccatctttgtggatct 13545291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 614 - 778
Target Start/End: Original strand, 13544598 - 13544762
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||||||||| || ||| ||||||||||||| |||||||| || ||||| | |||||||||  |||||||||||||  | || ||||  |||||||| ||    
T  13544598 ggagggatattttgacttcaagagtaagtttatagacttattccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagttttaattg 13544697  T
Q  714 ttaatcatgtgacc-tctttttggatctccatccaaataaaaactttctccaattattctccctta 778  Q
    |||||||||||||| | ||||||||||| ||| |  ||||| | |||||||| ||| |||||||||    
T  13544698 ttaatcatgtgaccatttttttggatct-cattcttataaatattttctccatttaatctccctta 13544762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 614 - 741
Target Start/End: Complemental strand, 41320831 - 41320703
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||| ||||| || ||||||| ||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  | |||||| ||    
T  41320831 ggagagatattttgactccaatagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgaattttaattg 41320732  T
Q  714 ttaatcatgtgacc-tctttttggatctc 741  Q
    ||||||||| |||| ||||||||||||||    
T  41320731 ttaatcatgcgaccatctttttggatctc 41320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 622 - 689
Target Start/End: Original strand, 11169280 - 11169347
Alignment:
Q  622 atattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaa 689  Q
    ||||| ||||||||| ||||||| |||| |||||||||||| | |||||||||   ||||||||||||    
T  11169280 atattgactccaagaataagtttatagatttactctaaatctccacctttcatctcattttaatctaa 11169347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 688
Target Start/End: Complemental strand, 8143402 - 8143321
Alignment:
Q  608 aaaaggggagggatatattaactccaa-gagtaagtttttagacttactctaaatcacaacctttcattgtattttaatcta 688  Q
    |||||||||||||||| || ||||||| |||||| | ||| || |||||| |||||||| || |||||| | ||||||||||    
T  8143402 aaaaggggagggatattttgactccaaggagtaactcttttgagttactccaaatcacatcccttcattatgttttaatcta 8143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 691
Target Start/End: Complemental strand, 15555093 - 15555016
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacg 691  Q
    |||||||||| |||||||||||||||| | |||  | |||||| |||||||| || | |||| |||||||||| ||||    
T  15555093 ggagggatattttaactccaagagtaactcttttaagttactccaaatcacatccctccattttattttaatccaacg 15555016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 9e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 614 - 727
Target Start/End: Original strand, 52362640 - 52362753
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||||||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  52362640 ggagggatattttgactccaagagtaagtttatagacctactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 52362739  T
Q  714 ttaatcatgtgacc 727  Q
    ||||||||||||||    
T  52362740 ttaatcatgtgacc 52362753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 614 - 718
Target Start/End: Complemental strand, 16674350 - 16674246
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 713  Q
    |||| ||||| || |||| |||||||||||| ||||||||||| |||||   |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  16674350 ggagagatattttgactcaaagagtaagtttatagacttactccaaatctacacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 16674251  T
Q  714 ttaat 718  Q
    |||||    
T  16674250 ttaat 16674246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 639 - 741
Target Start/End: Original strand, 16673555 - 16673658
Alignment:
Q  639 aagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttgga 737  Q
    |||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  | |||||| |||||||||||||||| ||||||||||    
T  16673555 aagtttatagacttactcaaaatatccacctttcatcttattttaatctaatggtttaaatgtgaattttaattgttaatcatgtgaccatctttttgga 16673654  T
Q  738 tctc 741  Q
    ||||    
T  16673655 tctc 16673658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 610 - 741
Target Start/End: Original strand, 41516456 - 41516588
Alignment:
Q  610 aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttta 709  Q
    |||||||||||||| || |||| |||||||  ||| ||||||||||| ||||| | |||||||||  |||||||||||||  | || ||||  |||||||    
T  41516456 aaggggagggatattttgactctaagagtatatttatagacttactccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagtttta 41516555  T
Q  710 aatgttaatcatgtgacc-tctttttggatctc 741  Q
    | |||||||||||||||| ||||||| ||||||    
T  41516556 attgttaatcatgtgaccatcttttttgatctc 41516588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 614 - 662
Target Start/End: Complemental strand, 8469861 - 8469813
Alignment:
Q  614 ggagggatatattaactccaagagtaagtttttagacttactctaaatc 662  Q
    |||||||||| || ||||||||||||| ||| |||||||||||||||||    
T  8469861 ggagggatattttgactccaagagtaaatttatagacttactctaaatc 8469813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 677 - 740
Target Start/End: Complemental strand, 41517221 - 41517157
Alignment:
Q  677 tattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttggatct 740  Q
    ||||||||||||| ||||| ||||  |||||||| |||||||||||||||| ||||| |||||||    
T  41517221 tattttaatctaatggcttaaatgtgagttttaattgttaatcatgtgaccatctttgtggatct 41517157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 631 - 773
Target Start/End: Original strand, 14125165 - 14125308
Alignment:
Q  631 ccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctc- 729  Q
    |||| ||||||||| ||||||||||| ||||| | |||||||||| ||||||||| |||||||||||    ||||||||| ||||||| |||| |||||     
T  14125165 ccaaaagtaagtttatagacttactccaaatcgctacctttcattttattttaatttaacggcttgatcattagttttaattgttaataatgtaacctcc 14125264  T
Q  730 tttttggatctccatccaaataaaaactttctccaattattctc 773  Q
    |||||  |||||  ||   ||||| |||||||||||||||||||    
T  14125265 tttttaaatctcattcttcataaatactttctccaattattctc 14125308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1073 - 1159
Target Start/End: Complemental strand, 14125439 - 14125355
Alignment:
Q  1073 agtgctttgcaatcgaagttgaaagcaatataatttgtagaatttataatgcaaccttatgataatattcgaagaaaagactgaaaa 1159  Q
    |||||||||||||||| |||||||||||| |||||| ||  ||||||| |||||||| ||||||||||| |||||||||||| ||||    
T  14125439 agtgctttgcaatcgatgttgaaagcaatgtaatttata--atttatagtgcaacctaatgataatatttgaagaaaagactaaaaa 14125355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 859 - 910
Target Start/End: Complemental strand, 14125656 - 14125605
Alignment:
Q  859 aactccattatataagtaactcgcccaattgaatttgtatataccatccata 910  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  14125656 aactccattatataagtaacttgcccaattgattttgaatataccatccata 14125605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 610 - 656
Target Start/End: Original strand, 2479292 - 2479338
Alignment:
Q  610 aaggggagggatatattaactccaagagtaagtttttagacttactc 656  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  2479292 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 2479338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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