View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_10 (Length: 504)
Name: NF1296_low_10
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 30 - 495
Target Start/End: Complemental strand, 38073112 - 38072652
Alignment:
| Q |
30 |
acatcaaatggattgtctaatatggagtcctcataagaaaagtatgttttggatcaagattgcttatcattaattctattaggtattgagaggaatccaa |
129 |
Q |
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| T |
38073112 |
acatcaaatggattgtctaatatggagtcctcataagaaaagtatgttttggatcaagattgcttatcattaattctattaggtattgagaggaatccaa |
38073013 |
T |
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| Q |
130 |
tccctatcatgtttctgtttataataccaactctcagtgttggtcgaagctttaacacatgtaaatcttgtttggagaatttttctttttaattagtctt |
229 |
Q |
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| T |
38073012 |
tccctatcatgtttctgtttataataccaactctcagtgttggtcgaagctttaacacatgtaaatcttgtttggagtatttttcttt----ttagtctt |
38072917 |
T |
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| Q |
230 |
cttaccaaaaagaagtttttaataaaggaatggcgatcgaccctatttgtctctgttgtggaaatgttaaggagtacttgaatcatgtctttaaagattg |
329 |
Q |
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| T |
38072916 |
cttaccaaaaagaagtttttaataaaggaatggcgattgaccctatttgtctctgttgtggaaatgttaaggagtacttgaatcatgtctttaaagattg |
38072817 |
T |
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| Q |
330 |
ctcttgggttaaaatatgtggtttcattctcctttgggtacgtgttcggtcaaagagtcctccattcctttcataccttggctagctagaacaagttatt |
429 |
Q |
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| T |
38072816 |
ctcttgggttaaaatatgtggtttcattctccttt-ggtacgtgttcggtcaaagagtcctccattcctttcataccttggctagctagaacaagttatt |
38072718 |
T |
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| Q |
430 |
ttccactcatctcaagatattatttcatatgtgttgtacctttgttatatcattttccattcatct |
495 |
Q |
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| T |
38072717 |
ttccactcatctcaagatattatttcatatgtgttgtacctttgttatgtcattttccattcatct |
38072652 |
T |
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