View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_11 (Length: 486)
Name: NF1296_low_11
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Original strand, 31648275 - 31648738
Alignment:
| Q |
16 |
atgtccttcttaattgtttcccaagacaatttcaattgctggatgaaaattcaatggaacattttaatattttacatcataaatataggtttgaatatga |
115 |
Q |
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| T |
31648275 |
atgtccttcttaattgtttcccaagacaatttcaattgctggatgaaaattcaatggaactttttaatattttacatcataaatataggtttgaatatga |
31648374 |
T |
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| Q |
116 |
tatatttgcaggaacaaaagatatattaaaacctaaaatatataagtttacctttatggaattaaattgaaaattcatagcattctgcattaggttatgt |
215 |
Q |
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| T |
31648375 |
tatatttgcaggagcaaaagatatattaaaacctaaaatatataagtttacctttatggaattaaattgaaaattcatagcattctgcattaggttatgt |
31648474 |
T |
|
| Q |
216 |
ttcatgttccatttctgatattttgcctcattaatagcttcactctctttaaccttatctcttaacttttccaatagaagctcatattcttgtgatttct |
315 |
Q |
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| T |
31648475 |
ttcatgttccatttctgatattttgcctcattaatagcttcactctctttaaccttatctcttaacttttccaatagaagctcatattcttgtgatttct |
31648574 |
T |
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| Q |
316 |
ggttcaattcacctttagcatccttagttttttcttctaactttgagcattgcacttcata-nnnnnnngcatggtttctacttcttgctttaatgttta |
414 |
Q |
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| T |
31648575 |
ggttcaattcacctttagcatccttagttttttcttctaactttgagcattgcacttcatattttttttgcatggtttctacttcttgcttcaatgttga |
31648674 |
T |
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| Q |
415 |
aatttccatacttttgtcttccacctctttagtcaatctaatgacgtctttatcgatattcttc |
478 |
Q |
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| T |
31648675 |
aatttccatacttttgtcttccacctctttagtcaatctaatgacgtctttatcgattttcttc |
31648738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 31648752 - 31648800
Alignment:
| Q |
429 |
tgtcttccacctctttagtcaatctaatgacgtctttatcgatattctt |
477 |
Q |
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|||||||||| ||||||||||||||||| || |||||||| || ||||| |
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| T |
31648752 |
tgtcttccacttctttagtcaatctaataacttctttatcaattttctt |
31648800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 43879354 - 43879274
Alignment:
| Q |
296 |
ctcatattcttgtgatttctggttcaattcacctttagcatccttagttttttcttctaactttgagcattgcacttcata |
376 |
Q |
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|||||||||||| || ||||| ||||||| ||||||||||| | |||| |||||| |||| |||||||| | ||||||| |
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| T |
43879354 |
ctcatattcttgagacttctgtctcaattctgctttagcatccctggtttcttcttccaactgtgagcatttcgcttcata |
43879274 |
T |
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