View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_12 (Length: 465)
Name: NF1296_low_12
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_12 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 101 - 465
Target Start/End: Complemental strand, 34349690 - 34349327
Alignment:
| Q |
101 |
ataagtctatatgtgttattttctaacttattttaatagtgtattagtttctaacttataagtctatatgtgagttaactaaatctataagtctacatgg |
200 |
Q |
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| T |
34349690 |
ataagtctatatgtgttattttctaacttattttaatagtgtattagtttctaacttataagtctatatgtgagttaactaaatctataagtctacatgg |
34349591 |
T |
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| Q |
201 |
acccttgtaaaatgcattgcagatatgaagatgatgcctatggtggcgattctagaatgctagcactgctatctaaggctctccgagatgttggtttgac |
300 |
Q |
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| T |
34349590 |
acccttgtaaaatgcattgcagatatgaagatgatgcctatggtggcgattctagaatgctagcactgctatctaaggctctccgagatgttggtttgac |
34349491 |
T |
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| Q |
301 |
gattgaatatcgtttagctttgctgtcacctacttatctgcctaattcacgaagaactgttgaagttaatcgaaaacacacaatctcgcgtattcgttgt |
400 |
Q |
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| T |
34349490 |
aattgaatatcgtttagctttgctgtcacctacttatctgcctaattcacgaagaactgtttaagttaatcaaaaacacacaatctcgcgtattcattgt |
34349391 |
T |
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| Q |
401 |
gtaacattcatgtcatcttatgcatatctcaattgatttttcaatttttattaggtttgaatttt |
465 |
Q |
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| T |
34349390 |
-taacattcatgtcatcttatgcatatctcaattgatttttcaatttttattaggtttgaatttt |
34349327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 34605040 - 34605162
Alignment:
| Q |
224 |
tatgaagatgatgcctatggtggcgattctagaatgctagcactgctatctaaggctctccgagatgttggtttgacgattgaatatcgtttagctttgc |
323 |
Q |
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| T |
34605040 |
tatgaagatgatgcatatggtggtgagtctgggatgctagcacttctatccgaggccctccaagagattggttcaatgattgaatatcgtttagctttgc |
34605139 |
T |
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| Q |
324 |
tgtcacctacttatctgcctaat |
346 |
Q |
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| T |
34605140 |
catcacttacttatatgtctaat |
34605162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 34349708 - 34349676
Alignment:
| Q |
140 |
tgtattagtttctaacttataagtctatatgtg |
172 |
Q |
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| T |
34349708 |
tgtattagtttctaacttataagtctatatgtg |
34349676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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