View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_15 (Length: 435)
Name: NF1296_low_15
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 86 - 426
Target Start/End: Original strand, 44008745 - 44009079
Alignment:
| Q |
86 |
cactcgactgccctaacgatcaagttttatcttagtagacacatagctagccttttagaaaataccaaaaacaagtcaaatttttatacagacttcttta |
185 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44008745 |
cacttgactgccctaacgatcaagttttatcttagtagacacatagctagccttttagaaaataccaaaaacaagtcaaatttttata--gacttcttta |
44008842 |
T |
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| Q |
186 |
agtgaaaattaagagtgacacacaagaaaactaggtgtgttctatttaaacattgtctgtaaagtagtatcagaactcttccatacaccacttttggtgt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44008843 |
agtgaaaattaagagtgacacacaagaaaactaggtgtgttctatttaaacattgtctgtaaagtagtatcagaactctttcatacaccacttttggtgt |
44008942 |
T |
|
| Q |
286 |
ataaactataattaaagagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgaga |
385 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44008943 |
ataaactataa----agagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgaga |
44009038 |
T |
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| Q |
386 |
tatcacatcttttgaagatccaacaaattttccacctatga |
426 |
Q |
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| T |
44009039 |
tatcacatcttttgaagatccaacaaattttccacctatga |
44009079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 298 - 426
Target Start/End: Original strand, 44005025 - 44005153
Alignment:
| Q |
298 |
taaagagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttt |
397 |
Q |
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| T |
44005025 |
taaagagttctgaatgaaactataactaaaaccaaatggcctttgcatccataagcatttgtttgagtgatccatcaacatgatgagatatcacatcttt |
44005124 |
T |
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| Q |
398 |
tgaagatccaacaaattttccacctatga |
426 |
Q |
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| T |
44005125 |
tgaggatcctacaaattttccacctatga |
44005153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 31028266 - 31028187
Alignment:
| Q |
6 |
aatctcaactctcaataatagaaattcatggtctgcaacaaattcatcattcaccaggaatctatacctcttgttcatct |
85 |
Q |
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| T |
31028266 |
aatcccaactctcaataatagaaattcatgatctgcaacaaattcatcattcaccaggaatctgtacctcttgttcatct |
31028187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 39846938 - 39846834
Alignment:
| Q |
322 |
actaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacc |
421 |
Q |
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|||| ||||||||||| | ||| |||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||| || || |||||||||||||| |
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| T |
39846938 |
actagaaccaaatggctctagcagccatgagcatttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccacc |
39846839 |
T |
|
| Q |
422 |
tatga |
426 |
Q |
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|||| |
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| T |
39846838 |
aatga |
39846834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 31035231 - 31035149
Alignment:
| Q |
11 |
caactctcaataatagaaattcatggtctgcaacaaatt--------catcattcaccaggaatctatacctcttgttcatct |
85 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
31035231 |
caactctcaataatagaaattcatgatctgcaacaaattaacaaattcatcattcaccaggaatttgtacctcttgttcatct |
31035149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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