View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_16 (Length: 430)
Name: NF1296_low_16
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 107 - 401
Target Start/End: Complemental strand, 21651977 - 21651683
Alignment:
| Q |
107 |
aatatcaggatgcaaaaaccttttagcataccacctgcataaaacagtataagaagtaaaagcttagatacgacgaactgcttcaagaattctcaagttt |
206 |
Q |
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| T |
21651977 |
aatatcaggatgcaaaaaccttttagcataccacctgcataaaacagtataagaagtaaaagcttagatatgacaaactgcttcaagaattctcaagttt |
21651878 |
T |
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| Q |
207 |
tatttaagagcgaaaaacctcagcctgtacattgtcaaccaaaaatcgaggggaaagggatgnnnnnnncataccatttggtttgtttcctagcactaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21651877 |
tatttaagagcgaaaaacctcagcctgtacattgtcaaccaaaaatcgaggggaaagggatgaaaaaaacataccatttggtttgtttcctagcactaat |
21651778 |
T |
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| Q |
307 |
atggattactttctttgaccattcgtatcgatcccattcactagttcgtccatcataatgaaagagcaaaatctcaaaatcatccgagaactaca |
401 |
Q |
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| T |
21651777 |
atggattactttctttgaccattcatatcgatcccattcactagttcgtccatcataatgaaagagcaaaatgtcaaaatcatccgagaactaca |
21651683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 277 - 401
Target Start/End: Original strand, 40420101 - 40420225
Alignment:
| Q |
277 |
ataccatttggtttgtttcctagcactaatatggattactttctttgaccattcgtatcgatcccattcactagttcgtccatcataatgaaagagcaaa |
376 |
Q |
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||||||||| ||||||||||| ||||||| ||||||| | ||||||||||| || || ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40420101 |
ataccattttgtttgtttccttgcactaacatggattgcattctttgaccactcaaattgatcccattcactagttcgaccatcataatgaaagagcaaa |
40420200 |
T |
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| Q |
377 |
atctcaaaatcatccgagaactaca |
401 |
Q |
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|| |||||||||| || ||||||| |
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| T |
40420201 |
attgcaaaatcatcagaaaactaca |
40420225 |
T |
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