View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_17 (Length: 420)
Name: NF1296_low_17
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_17 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 106 - 356
Target Start/End: Original strand, 32513345 - 32513595
Alignment:
| Q |
106 |
gtatctcatcgccaacgagaacacaacgcttaaggccattcaattgcaacggaatagctgattcacattctttaagctgagcagcttcatcaatcactaa |
205 |
Q |
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| T |
32513345 |
gtatctcatcgccaacgagaacacaacgcttaaggccattcaattgcaacggaatagctgattcacattctttaagctgagcagcttcatcaatcactaa |
32513444 |
T |
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| Q |
206 |
aaattccacttgtgccattccttctgagaacaattttacacaactcgaagcagtgcataaaagaaggcatgcattcttcaagcaaaattgtgatattccg |
305 |
Q |
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| T |
32513445 |
aaattccacttgtgccattccttctgagaacaattttacacaacttgaagcagtgcataaaagaaggcatgcattcttcaagcaaaattgtgatattcca |
32513544 |
T |
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| Q |
306 |
tatttggatgtaactttaggaagcttaatagtctcagaaagaaaacaaaga |
356 |
Q |
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| T |
32513545 |
tatttggatgtaactttaggaagcttaatagtctcagaaagaaaacaaaga |
32513595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 111 - 355
Target Start/End: Complemental strand, 32544217 - 32543973
Alignment:
| Q |
111 |
tcatcgccaacgagaacacaacgcttaaggccattcaattgcaacggaatagctgattcacattctttaagctgagcagcttcatcaatcactaaaaatt |
210 |
Q |
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| T |
32544217 |
tcatcaccaatgagaatacaacgtttgaggccatgtaattgcagaggaatagctgattcacattctttaagctgagcagcttcatcaatcactaaaaact |
32544118 |
T |
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| Q |
211 |
ccacttgtgccattccttctgagaacaattttacacaactcgaagcagtgcataaaagaaggcatgcattcttcaagcaaaattgtgatattccgtattt |
310 |
Q |
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| T |
32544117 |
ccactcgtttcattccttccgtgtacaattttgaagaacttgatgcagtacaaaaaagaaggcatgcatttttcaagcaaaattgtgatatgccatattt |
32544018 |
T |
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| Q |
311 |
ggatgtaactttaggaagcttaatagtctcagaaagaaaacaaag |
355 |
Q |
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| T |
32544017 |
tgatgtaagtttaggaagcttgatagtctcacaaagaaaacaaag |
32543973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 32614042 - 32614108
Alignment:
| Q |
165 |
gattcacattctttaagctgagcagcttcatcaatcactaaaaattccacttgtgccattccttctg |
231 |
Q |
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| T |
32614042 |
gattcacattctttcagctgtgctgcttcatcaatcactaaaaatttcacgtgagccattccttctg |
32614108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 32645331 - 32645381
Alignment:
| Q |
165 |
gattcacattctttaagctgagcagcttcatcaatcactaaaaattccact |
215 |
Q |
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| T |
32645331 |
gattcacattctttcagctgtgctgcttcatcaatcactaaaaatttcact |
32645381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 16071 - 16029
Alignment:
| Q |
165 |
gattcacattctttaagctgagcagcttcatcaatcactaaaa |
207 |
Q |
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| T |
16071 |
gattcacattctttcagctgtgcagcttcatcaatcactaaaa |
16029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 28856310 - 28856364
Alignment:
| Q |
156 |
ggaatagctgattcacattctttaagctgagcagcttcatcaatcactaaaaatt |
210 |
Q |
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| T |
28856310 |
ggaatggctgattcacattcttttagctgagctgcttcatcaataactagaaatt |
28856364 |
T |
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