View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_21 (Length: 370)
Name: NF1296_low_21
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 12813150 - 12812826
Alignment:
| Q |
29 |
accccttaatatggtattctcattaattcatttgcttattnnnnnnnnnnnntccagtgcaagttcaaaaact-----------tcctcgtctcatagtc |
117 |
Q |
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| T |
12813150 |
accccttaatatggtattctcattaattcatttgcttattaaaaaataataatccagtgcaagttcaaaaactaccattatttttcctcgtctcatagtc |
12813051 |
T |
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| Q |
118 |
ttcaatgttgtaatcctttgattctctaacaatcatcatatagattggtcccaagatagcaacatatatggaacatgcatggtcatgtccacgtatcata |
217 |
Q |
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| T |
12813050 |
ttcaatgttgtaatcttttgattctctaacaatcatcatatagattggtccaaagatagcaacatatatggaacatgcatggtcatgtccatgtatcata |
12812951 |
T |
|
| Q |
218 |
aagttgaaataagacttgacatttagaacgtaattcatgtgtcaattataaatttacttccttgtcatataaatgatgtgctcacttcaaatcatggcat |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12812950 |
aagttgaaataagacttgacatttagaatgtaattcatgtgtcaattataaatttacttccttgtcatataaatgatgtgctcacttcaaattatggcat |
12812851 |
T |
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| Q |
318 |
tgatcaacatcatggttctttatca |
342 |
Q |
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||||||||||||||||||||||||| |
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| T |
12812850 |
tgatcaacatcatggttctttatca |
12812826 |
T |
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