View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_3 (Length: 633)
Name: NF1296_low_3
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 627
Target Start/End: Complemental strand, 31035192 - 31034580
Alignment:
| Q |
13 |
aacaaattcatcattcaccaggaatctatacctcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggacaatttcacggtta |
112 |
Q |
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| T |
31035192 |
aacaaattcatcattcaccaggaatttgtacctcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggacaatt-cacggtta |
31035094 |
T |
|
| Q |
113 |
cggcttaaacatgattgttaactacacactcacaacaacaacaaatcttcaatcgagtgaaagcctttctctctccagatgaaattaccattctttatct |
212 |
Q |
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| T |
31035093 |
cgacttaaacatgattgttaactacacactcacaacaacaacaaatcttcaatcgagtgaaagcctttctctctccggatgaaattacccttctttatct |
31034994 |
T |
|
| Q |
213 |
tcaacacaaatatggaaaaattacacggtccacacaccatcaacaacctcaccacaacctctttccatcaccatacatcatccatccctcaatcgaactc |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31034993 |
tcaacacaaatatgaaaaaattacacggtccacacaccatcaacaacctcaccacaacctctttccatcaccatacatcatccatctctcaatcgaactc |
31034894 |
T |
|
| Q |
313 |
acaacaacaacttcctctgaaattgaagaacccataattcatcactcaatttgaagaacccagaacacacaacaacaacaaccctaatgaatctgagttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||| |
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| T |
31034893 |
acaacaacaacttcctctgaaattgaagaacccataattcatcactcaatttgaagaaccaagaacacacaacaacaactacccaaatgaatctaagttt |
31034794 |
T |
|
| Q |
413 |
gcaaatttatattttgtttcgattttgaggtgtgtttagttcaattttgtaactcacaacatcaacgtttaacaacaacaacttcatatgaaattgaaga |
512 |
Q |
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| T |
31034793 |
gcaagtttatattttgtttcgattttgaggtttgtttagttcaattttgtaacacacaacatcaa-gtttaacaacaacaacttcatatgaaattgaaga |
31034695 |
T |
|
| Q |
513 |
acccagaacccatctctcaattaaagaacacaaaacactcaacaacaaccaccataatgaattgaattttgcaaggctagtattttgtttcaattttggg |
612 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31034694 |
acccaaaacccatctctcaattaaagaacacaaaatactcaacaacaactaccataacgaattgaattttgcaaggctggtattttgtttcaattttggg |
31034595 |
T |
|
| Q |
613 |
gaatatattcttcga |
627 |
Q |
| |
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|||||| || ||||| |
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| T |
31034594 |
gaatattttgttcga |
31034580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 346 - 627
Target Start/End: Complemental strand, 31027960 - 31027679
Alignment:
| Q |
346 |
ataattcatcactcaatttgaagaacccagaacacacaacaacaacaaccctaatgaatctgagtttgcaaatttatattttgtttcgattttgaggtgt |
445 |
Q |
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| T |
31027960 |
ataattcatcactcaatttgaagaacccagaacacacaacaacaacaaccctaatgaatctgagtttgcaagtttatattttgtttcgattttgacgtgt |
31027861 |
T |
|
| Q |
446 |
gtttagttcaattttgtaactcacaacatcaacgtttaacaacaacaacttcatatgaaattgaagaacccagaacccatctctcaattaaagaacacaa |
545 |
Q |
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| T |
31027860 |
gtttagttcaattttgtaactcacaacatcaacgtttaacaacaacaacttcatatgaaattgaagaacccagaacccatctctcaattaaagaacacaa |
31027761 |
T |
|
| Q |
546 |
aacactcaacaacaaccaccataatgaattgaattttgcaaggctagtattttgtttcaattttggggaatatattcttcga |
627 |
Q |
| |
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| T |
31027760 |
aacactcaacaacaactatcataatgaatttaattttgcaaggctagtattttgtttcaattttggggaatattttgttcga |
31027679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31028242 - 31027961
Alignment:
| Q |
1 |
ttcatggtctgcaacaaattcatcattcaccaggaatctatacctcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggaca |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31028242 |
ttcatgatctgcaacaaattcatcattcaccaggaatctgtacctcttgttcatctagttgtctttgatacctcatgtgttgtggagttaattgtggaca |
31028143 |
T |
|
| Q |
101 |
atttcacggttacggcttaaacatgattgttaactacacactcacaacaacaacaaatcttcaatcgagtgaaagcctttctctctccagatgaaattac |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
31028142 |
a-ttcacggttacggcttaaacatgattgttaactacacactcacaacaacaacaaatcttcaatcgagtgaaagcctt--tctctccggatgaaattac |
31028046 |
T |
|
| Q |
201 |
cattctttatcttcaacacaaatatggaaaaattacacggtccacacaccatcaacaacctcaccacaacctctttccatcacca |
285 |
Q |
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| T |
31028045 |
aattctttatcttcaacacaaatatggaaaaattacgtggtccacacaccatcaacaacctcaccacaacctatttccatcacca |
31027961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 404
Target Start/End: Complemental strand, 31027822 - 31027732
Alignment:
| Q |
313 |
acaacaacaacttcctctgaaattgaagaacccataattcatcactcaatttgaagaacccagaacacacaacaacaacaaccctaatgaat |
404 |
Q |
| |
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|||||||||||||| | ||||||||||||||||| || |||| ||||| || |||||| || ||||| |||||||||| | | |||||||| |
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| T |
31027822 |
acaacaacaacttcatatgaaattgaagaacccagaacccatctctcaa-ttaaagaacacaaaacactcaacaacaactatcataatgaat |
31027732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 59 - 516
Target Start/End: Original strand, 13435188 - 13435638
Alignment:
| Q |
59 |
ttgtctttgatacctcatgtgttgtggagttaattgtggacaatttcacggttacggcttaaacatgattgttaactacacactcacaacaacaacaaat |
158 |
Q |
| |
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|||| ||||||||||| |||||||| ||| |||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
13435188 |
ttgtttttgatacctcttgtgttgtagagctaattgcagacaatt-cactattatggcttaaacatgattgttaactacacactcacaacaacaat---t |
13435283 |
T |
|
| Q |
159 |
cttcaatcgagtgaaagcctttctctctccagatgaaattaccattctttatcttcaacacaaatatggaaaa-attacacggtccacacaccatcaaca |
257 |
Q |
| |
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||||||||||||||||| |||| |||| ||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
13435284 |
cttcaatcgagtgaaagtcttttcctctg--gataaaattacccttctttatcttcaacacaaatctggaaaaaattacacggtccacacaccatcaaca |
13435381 |
T |
|
| Q |
258 |
acctcaccacaacctctttccatcaccatacatcatccatccctcaatcgaactcacaacaacaacttcctctgaaattgaagaacccataattcatcac |
357 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| |||||||||| | ||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
13435382 |
acctcaccacaacctc-ttccatcacca-acatcatccatctctcaatcgaatt---gacaacaacttcctatgaatctgaagaactcataattcatcac |
13435476 |
T |
|
| Q |
358 |
tcaatttgaagaacccagaacacacaacaacaacaa---ccctaatgaatctgagtttgcaaatttatattttgtttcgattttgaggtgtgtttagttc |
454 |
Q |
| |
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|||| |||||||||||| | |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13435477 |
tcaa-ttgaagaacccaaagcacacaacaacaacaacttccctaatgaatatgagtttgcaaggttatattttgtttcgattttgaggtgtgtttagttc |
13435575 |
T |
|
| Q |
455 |
aattttgtaactcacaacatcaacgtttaacaacaacaa-cttcatatgaaattgaagaaccc |
516 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| || ||| ||||| |||||||||||| |
|
|
| T |
13435576 |
aattttgtaactcacaacaacaacatttaacaacaaaaattttcctatgatattgaagaaccc |
13435638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 32687680 - 32687752
Alignment:
| Q |
314 |
caacaacaacttcctctgaaattgaagaacccataattcatcactcaatttgaagaacccagaacacacaacaa |
387 |
Q |
| |
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|||| |||||||||||||||||||||||| ||| |||||||| ||||| ||||||||| |||||||||||||| |
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| T |
32687680 |
caactacaacttcctctgaaattgaagaatccaaaattcatctctcaa-ttgaagaacatagaacacacaacaa |
32687752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 557
Target Start/End: Original strand, 32687680 - 32687752
Alignment:
| Q |
485 |
caacaacaacttcatatgaaattgaagaacccagaacccatctctcaattaaagaacacaaaacactcaacaa |
557 |
Q |
| |
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|||| |||||||| | ||||||||||||| ||| || |||||||||||| ||||||| | ||||| |||||| |
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|
| T |
32687680 |
caactacaacttcctctgaaattgaagaatccaaaattcatctctcaattgaagaacatagaacacacaacaa |
32687752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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