View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_30 (Length: 319)
Name: NF1296_low_30
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 17319982 - 17319792
Alignment:
| Q |
33 |
ccacagaaacacagttatgttcaaaacacccgacataaacaaa-cagaaggccaaaccaaaggataagttagtccctctagcaaaagctaaattccatgg |
131 |
Q |
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| T |
17319982 |
ccacagaaacacagttacgttcagaacacccgacataaaaaaaacagaaggccaaaacaaaggataagttagtctccctagcaaaagctaaattccatgg |
17319883 |
T |
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| Q |
132 |
actgggtgagccaaacaccgcacccaaatcatctttttaagcactcgttcgggttccaactccactcatagaagatacaaggagatatatt |
222 |
Q |
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| T |
17319882 |
actgggtgagccaaacaccgcacccaaatcatctttttaagcactcgttcgggttccaactccactcatagaagatacagggagatatatt |
17319792 |
T |
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