View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1296_low_34 (Length: 302)
Name: NF1296_low_34
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_34 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 64 - 302
Target Start/End: Original strand, 6202982 - 6203220
Alignment:
| Q |
64 |
atactcctcataagcatcaagtatgtaaaaaggcaacgacccctctggctccaaattaaactccgtctgttgttgattattcgtatcagcaacatttacc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6202982 |
atactcctcataagcatcaagtatgtaaaaaggcaacgacccctctggctccaaattaaactccgtctgttgttgattattcgtatcagcaacatttacc |
6203081 |
T |
|
| Q |
164 |
tccccacctccacctccaccactcctagccgcctgccatccagccgtagcacacaacttcggatccaccgcttcttcactaactttcgcattcaaagtaa |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6203082 |
tccccacctccacctccaccactcctagccgcctgccatccagccgtagcacacaacttcggatccaccgcttcttcactaactttcgcattcaaagtaa |
6203181 |
T |
|
| Q |
264 |
aaccctcctttttcacaacaggtttcacttccatttctt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6203182 |
aaccctcctttttcacaacaggtttcacttccatttctt |
6203220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University